Detailed information on CNT30142438


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000009, E-value = 3e-82

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513456Lolium perenneJuglans regia98.0819.3192.5613forward
CNT30500477Lolium perenneCoffea canephora98.0833.6692.01613forward
CNT30269781Lolium perenneChenopodium quinoa98.0820.7490.7613forward
CNT30730500Lolium perenneCorchorus capsularis98.0851.6493.47613forward
CNT30630109Lolium perenneVigna unguiculata98.0819.4592.33613forward
CNT30638683Lolium perenneCapsicum annuum81.7699.0389.82511reverse complement
CNT3090649Lolium perenneSolanum tuberosum98.0822.4292.66613forward
CNT30154922Lolium perennePrunus persica98.0836.2990.54613reverse complement
CNT30411255Lolium perennePapaver somniferum98.0820.1992.66613reverse complement
CNT30319706Lolium perenneAsparagus officinalis98.0821.3393.8613forward
CNT30102929Lolium perenneOryza rufipogon98.7240.5496.11617reverse complement

Expression of CNT30142438

Peptides detected in this lncRNA

>peptide 1 (35 aa)
ETMGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQR*

>peptide 2 (32 aa)
MSKCIGRGAFRLRGKQPRKRGSTNRKRECRLE*

>peptide 3 (68 aa)
MNGAKRSVEAVGCQNASVGERSALEGSNRESGGRRIGSENVGLSNENIGKNPMPRKPKVSSARFVHGG*

Sequence

>CNT30142438
TGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTGGGGGTG
CAAAGATAGCCATGAGGTTTGCCTAGAAGCAGCCACCCTTTAAAGAGTGTATAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGGGCTAA
GCGATCTGTCGAAGCTGTGGGATGTCAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCAACCGCGAAAGCGGGGGTCGACGAATCGGAAGC
GAGAATGTCGGCTTGAGTAACGAAAACATTGGTAAGAATCCAATGCCCCGAAAACCCAAGGTTTCCTCCGCAAGGTTCGTCCACGGAGGGTGAGTCAGGG
CCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACAACAGGTCAATATTCGTGTACTACCCCTTGTTTGTACGGAGGGACGGAGGAGGCTAGGTTAGCCGA
AAGATGGTTATAGGTTTAAGGACACAAGGTGACCCTGCTTTGTCAGGGTAAGAAGGGGTAGAGAAAATACCTCGAGCCGAGGTCCGAGTACCAAGCGCTG
CAGCGCTGAAGTATCAGCCCCATGT