CANTATAdb - search

Detailed information on CNT30142281

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG87|RS272_HORVU, E-value = 2e-72

BLAST vs NONCODE:
NONSTUT000620, E-value = 7e-19

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30693384	Lolium perenne	Oryza sativa	28.22	43.4	90.32	217	forward
CNT30674820	Lolium perenne	Setaria viridis	29.52	42.83	92.95	227	forward
CNT30523172	Lolium perenne	Setaria italica	29.52	35.86	92.95	227	forward
CNT30435581	Lolium perenne	Aegilops tauschii	50.98	78.24	93.88	392	forward
CNT30656187	Lolium perenne	Triticum dicoccoides	50.98	58.42	94.13	392	forward

Expression of CNT30142281

Peptides detected in this lncRNA

>peptide 1 (31 aa)
ISEHSAPKYENRVDKFLRCQDHINISIEQDE*

>peptide 2 (69 aa)
MRRCWSGGMPSLSWILAFTLSMVSEDSTSKVMVFPVRVFTKICILAGGRGSGGLPTWGDGGGSRRRRGGG

Sequence

>CNT30142281
CCATTTCAGAGCATAGTGCCCCCAAATATGAAAATAGAGTAGATAAATTTCTCAGATGCCAGGATCACATCAACATAAGTATAGAGCAGGACGAATAACT
CAAACATAATTCGAATTCAACAGCACTTGATAATATCCATGACGACACGACATAAAACGAAAAGTAGGCACACCAATAAAGGTGCAGGTGTTCTGTTCCA
AAATTCTACTTCAATATGACAAGACAGACATAAATTGACAGCTAACGAGAACCTTCTTCTTTTTTCTTCTTCTCCGTACAAGAGTAGAGCGAAGCAGCCT
ACGCCTTCTGGTTGTAGACGTAGGTGAGGCCGCACTTACCGCAGTAGTGGCGGTCGAAGTGGTTGGCCATGAAGGTGCCAGCGCCGCACTCAGCGTTGGG
GCACTCCTTGCGGAGGCGGGTTACCTTGCCGGTGGAGTCGTCAACCTTGTAGAACTGCAGCAGGGCGAGCTTGACCTTCTTGTGCTTGTGCTTTTGCTTC
TTGGGCTTGGTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGA
TCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTGGCCGGCGG
CCGCGGCAGCGGCGGCCTACCTACCTGGGGCGACGGTGGTGGTTCGCGGCGGCGGCGGGGTGGAGGCGG