Detailed information on CNT30142247


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30177983Lolium perenneSecale cereale8.8532.9292.580reverse complement
CNT30469901Lolium perenneSaccharum spontaneum15.0459.9186.76136forward

Expression of CNT30142247

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MECSSMEILFISSGTIPQEAHHGSQASGEEEEERPAGPTCAPPGAPILLLERITGVTGDHWFPRRWPLELIQK*

>peptide 2 (66 aa)
MQLNGNTLYFIRYDPARSTSWKPSKWRRRGREASRPNLCTARRTYLAAGTDHWSDRRSLVPTPVAT*

>peptide 3 (34 aa)
MEAKQVEKKRKRGQQAQPVHRPAHLSCCWNGSLE*

>peptide 4 (44 aa)
MVPVSLWLHGGFLLLPLPIKDSHQGLDVRIASLIGFYDNILALS*

>peptide 5 (42 aa)
MDKSVYSGLCGAAAHGPCFLVAAWWFSVAAPAHQGLPSRTGC*

Sequence

>CNT30142247
ACCATGAGATATCCAATAAAGCTTCCTACTAGTAGAAGCCCTGTGTTTACGTGTATGTGAAACACAAGCTTCCTAGTAGTATAAGTCCTCTGTGTGTGAA
GCACATCAAGACAGAGAGATAGAGCTGTGAGAGTGAAGCTCATATCTTTAGGAGAGAGATAGAGTCATGGGTGAGAGCTAGTAGATAGCATAGCTTCAAC
ACACCACCGCCTTAAGATTGCCAAGTCTACTAAGTGGACCAATGACCCAAGCCTGTGCCAAAGCAAGCAATCCAACGAGAGGTGAATTCGCCCCTCTCGA
CGTGTGACTTAGACACTCCTTTGGATGGAATGCAGCTCAATGGAAATACTCTTTATTTCATCAGGTACGATCCCGCAAGAAGCACATCATGGAAGCCAAG
CAAGTGGAGAAGAAGAGGAAGAGAGGCCAGCAGGCCCAACCTGTGCACCGCCCGGCGCACCTATCTTGCTGCTGGAACGGATCACTGGAGTGACCGGCGA
TCACTGGTTCCCACGCCGGTGGCCACTTGAACTGATACAGAAGTAGACCAGTCCCGGACTAGCGCACCAACCGACGGTCACTAGAATGTCCGGTGCCTAG
TTTGTGATGGATAAGTCTGTGTACTCTGGTCTTTGTGGGGCTGCAGCACATGGTCCCTGTTTCCTTGTGGCTGCATGGTGGTTTTCTGTTGCTGCCCCTG
CCCATCAAGGACTCCCATCAAGGACTGGATGTTAGGATAGCATCCTTGATTGGATTTTACGACAACATCTTAGCATTATCTTAGACTAGCATCTTAGACT
AGCATCTAACGTATGCTTGGCTGTCTAGCGGCCTATAAATATGTAACCCCAACCCCTCAGGTTGGTATGACATTGTGTGAGAAATAAACCAGAAAATTGC
CCAA