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Detailed information on CNT30142107


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673662Lolium perenneSetaria viridis8.3825.6294.4472forward
CNT30306320Lolium perenneTriticum aestivum11.7624.7592.08101forward
CNT30226503Lolium perenneHordeum vulgare20.3731.1982.29175forward
CNT30399846Lolium perenneTriticum turgidum11.7620.4592.08101forward
CNT30589124Lolium perenneMusa acuminata10.5929.9392.3191forward
CNT30443761Lolium perenneAegilops tauschii15.7228.4288.89135forward
CNT30244624Lolium perenneAvena sativa21.1974.5992.31182forward
CNT30669889Lolium perenneTriticum dicoccoides11.7639.7692.08101forward
CNT306353Lolium perenneZea mays6.8725.6591.5359forward
CNT30364335Lolium perenneSorghum bicolor20.1419.8483.82173forward
CNT30148497Lolium perenneBrachypodium distachyon7.120.9691.861forward
CNT30102355Lolium perenneOryza rufipogon19.9128.8983.63171forward
CNT30580577Lolium perenneEchinochloa crusgalli17.8121.1988.24153forward
CNT30115974Lolium perenneOryza nivara8.0331.5192.7569forward

Expression of CNT30142107

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MVTRPEVVVAEATQNRDRPDDGANRLGTPTALQLLNPLDAIALPIASCHATTTTTRQEEEEEEVAAVRRQR

>peptide 2 (54 aa)
LDTLLASSIRQSPSSLICKILKFSLRAVPSSLSRKYQFGFGTESQLYIDRCVHN*

>peptide 3 (37 aa)
MKLYTLHYKGVFAGQRCGRRCCTAAVPLNESIQTVHA*

>peptide 4 (66 aa)
MFLGMTMSPMLLCQGSARLPQGTALPRYVACPPGMAAHSCAFTQLPRPRASGMSTPGTASIAHRQW*

Sequence

>CNT30142107
ATTGGACACACTCCTAGCTAGTAGTATACGCCAATCTCCATCCTCCCTGATCTGTAAAATCTTAAAATTTTCATTGCGAGCGGTACCATCATCATTGTCA
CGCAAATACCAGTTTGGTTTTGGTACAGAGAGCCAGCTATATATTGATCGATGCGTTCACAATTAACAGTAGGCGCTACTGGATGAAACTTTACACATTA
CATTACAAAGGTGTATTTGCCGGGCAGAGATGTGGCCGACGTTGTTGTACAGCAGCAGTTCCTCTGAATGAATCCATTCAGACAGTACATGCATGAAAAC
CATGCGTGCAGCTCCTCGGGTGGGACTCGTCATCAAGGGCTGTAGATGTTCCTAGGGATGACGATGTCGCCGATGTTGTTGTGCCAGGGGTCGGCGAGGT
TGCCCCAGGGCACGGCGTTGCCCAGGTACGTCGCCTGCCCGCCGGGGATGGCTGCCCACTCCTGCGCCTTCACCCAGTTGCCCAGACCCAGGGCCTCAGG
GATGAGCACGCCGGGCACCGCCAGCATCGCCCACCGGCAGTGGTAGATCTCCGACTCCTTGAACCGCTCGAAGTTCTCCGGGACGGTGGCGAGGAGCCGT
CGAGGTGGGCGGGGCGCGGCTGGCCGGGGAACCACTCGGCTGACATGGTGACGCGGCCGGAGGTGGTGGTGGCGGAGGCCACACAGAACCGGGACCGCCC
CGACGACGGAGCCAACAGGCTGGGCACGCCCACCGCGCTGCAGCTCCTCAACCCGCTCGACGCCATTGCTCTGCCGATCGCTTCGTGCCACGCTACGACC
ACAACGACAAGGCAAGAGGAAGAAGAGGAGGAGGTGGCGGCTGTGAGAAGACAAAGGAA