« Back to Zea mays search


Detailed information on CNT3014188


BLAST search results

BLAST vs Swiss-Prot:
sp|P23993|PSAL_HORVU, E-value = 2e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673014Zea maysSetaria viridis42.4158.4894.44324forward
CNT30520920Zea maysSetaria italica42.9347.3394.51328forward
CNT30516978Zea maysJuglans regia17.9320.0985.4137forward
CNT30292897Zea maysTriticum aestivum42.9355.6986.59328forward
CNT30390478Zea maysTriticum turgidum42.9327.5286.28328forward
CNT3084834Zea maysVigna radiata10.7321.386.5982forward
CNT30438727Zea maysAegilops tauschii28.468.6789.4217forward
CNT30249726Zea maysAvena sativa43.0641.0284.8329forward
CNT30662078Zea maysTriticum dicoccoides24.0863.4588.04184forward
CNT30454500Zea maysSaccharum spontaneum28.0159.1292.52214forward
CNT30135064Zea maysLolium perenne36.7849.2188.97281forward
CNT30720963Zea maysTriticum spelta40.5855.6686.45310forward
CNT30344813Zea maysEragrostis tef35.2151.4391.45269forward
CNT30620323Zea maysCajanus cajan25.7911.0280.2197forward
CNT30104607Zea maysOryza rufipogon14.1430.0895.37108forward
CNT30578384Zea maysOryza barthii18.1935.4694.96139forward
CNT30115596Zea maysOryza nivara6.6823.7294.1251forward
CNT30556995Zea maysPanicum hallii27.3629.7394.26209forward
CNT30551896Zea maysOryza brachyantha42.4148.8791.67324forward

Expression of CNT3014188

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MPPKKNPPVNLAQPSAVCSLSASFFLPVSVSVGAVDGSPSLKEATPYMVRQTLRMATRPAAPSAPAWPCTGVLRSGPVSAKGPTRR*

Sequence

>CNT3014188
GGAAAATGGAAATCCTTTGAAAAAATGAGGTTAACAAACTAGCTCTGAATGATGCATCCAATAAGGTAAAAAAAAGTTGAACAGGTTACATCCCAATCCA
TCCATGTGCAAAGCAGAGGAATTACATTTATACACGGCGCTGATCACCGCTGGAGTGAAATGAAACAAGGACCACACCACCTACATACCATGCAGCTAGA
GAGGAGGATCGGCCGGAGCTATATATATACGCATCTTTGATGATTTCTACTTGAAGAAGTAGGGGAGGTCGAGCACGTAGAGGAGAAAGTAGGCCCAGAG
CACGCCGGAGATGCCGCCGAAGAAGAACCCCCCGGTGAACTTGGCCCAGCCGTCGGCGGTCTGCAGCTTGTCGGCCTCCTTCTTCCTGCCGGTGAGCGTG
AGCGTGGGCGCCGTGGACGGGTCCCCCTCGTTGAAGGAGGCGACGCCGTACATGGTGAGGCAGACGCTGAGGATGGCGACGAGGCCGGCGGCGCCGAGCG
CGCCGGCCTGGCCGTGCACGGGCGTGCTGCGGAGCGGGCCCGTGAGCGCGAAGGGCCCCACGAGGAGGTAGCCCAGCGCCTGACAGGCCCCTCGGCCTCG
AGTGCACGACGAGGCTGCTCTTCATCACCTGGCTCGCCATGGGAGCGTAAGCTGTGGCCATCTCCACCGACACACACACAGCAGCACGCGCACGGATCGG
ATCCGCCGGCTAACTCAGATCTGCCTGCAGACGCGACGACTACTGGCCGGTAGGTACTAGCTGA