CANTATAdb - search

Detailed information on CNT30141870

BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 4e-158

BLAST vs NONCODE:
NONMEST001181, E-value = 9e-130

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30583253	Lolium perenne	Echinochloa crusgalli	71.11	32.75	90.92	694	forward

Expression of CNT30141870

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MVRHLLTTTEAEHQTPETHTEGARLSTPVRKAVPY*

>peptide 2 (61 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVLTKICMPPRRRSTRWSVDSFWML*

>peptide 3 (45 aa)
MRRCWSGGMPSLSWIFAFTLSMVSEDSTSRVMVLPVRVFTKICICK

>peptide 4 (53 aa)
MPSLSWIFAFTLSMVSDDSTSRVMVLPVRVLTKICMPPRRRSTRWRVDSFWIL*

Sequence

>CNT30141870
GTTCAGGACTCACTTATTCATTCATTCAAAGTTCAAAGATGCTGCATCACAGCATAAGTTTGTAGACACAAGGTGACATAACACGAGACCACAATACAAC
AGAATCACAGGACCAGACCACCCGAGACACACACCGAAGGAACCAGACTTGTGAACCCCAGGAGAGAGAAACAGTGCCATGGTTAGGCACTTACTGACCA
CCACGGAGGCGGAGCACCAGACACCAGAGACACACACCGAAGGAGCCAGACTTTCAACCCCAGTGAGAAAAGCAGTGCCTTACTGACCACCACGGAGGCG
GAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCC
GGAGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCTGACGACTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA
CAAAGATCTGCATGCCACCACGAAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCCAGGGTGCGGCCATCCTCAAGCTGCTT
GCCGGCAAAGATGAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCAAGG
GTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATGCCACCGCGGAGGCGTAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAG
CGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTC
GATGGTGTCTGAGGACTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATCTGTAAA