Detailed information on CNT30141592


BLAST search results

BLAST vs Swiss-Prot:
sp|Q71V89|H33_GOSHI, E-value = 2e-66

BLAST vs NONCODE:
NONBRAT001321, E-value = 2e-25

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30591253Lolium perenneMusa acuminata13.3539.190.98122forward

Expression of CNT30141592

Peptides detected in this lncRNA

>peptide 1 (29 aa)
QPGSVQITQQCNTIKQSYRDEEQEATHNC*

>peptide 2 (38 aa)
NRDQFKLHSNATPLNRVTGMKNRRLHTIANCRNIDNCK*

>peptide 3 (59 aa)
MQRREGTGDEPWWRAASWGPCRRWTCGRSAWYGPWRRSFRVRTWLLRLVDLGNWMRKVD*

>peptide 4 (29 aa)
MAPLLPSSNLASAACGFGELDEKSRLVGRW

>peptide 5 (83 aa)
MSLGMMVTRLAWMAQRLVSSKRPTRYASAASWSARTAWLWNRRSVLKSCAISRTRRWKGSLRMSSSVLFWYLRISRSATVPGL*

Sequence

>CNT30141592
CAACCGGGATCAGTTCAAATTACACAGCAATGCAACACCATTAAACAGAGTTACAGGGATGAAGAACAGGAGGCTACACACAATTGCTAACTGTCGCAAT
ATCGATAACTGTAAATAGCATTCATATGAATTCAGCGGAAACAGAGAAGCGGTTTCTTGTAACTACGGTAAAACATCCAGATCTTTACAACGAAATAAAA
CCTTCCTAACACGACCTAACAAGATCTAAATCCAGAAGGGAACCAACTACGGAATCGCTTGCGTCGACCGCGACCGGGCATCACCGGCCTAGGCGCGCTC
ACCGCGGATGCGGCGGGCGAGCTGAATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCAGAGGTTGGTGTCCTCGAAGAGGCCGACGAGG
TACGCCTCCGCCGCCTCCTGGAGCGCCAGGACCGCGTGGCTCTGGAACCGGAGGTCCGTCTTGAAGTCCTGCGCGATCTCGCGGACGAGGCGCTGGAAGG
GCAGCTTGCGGATGAGCAGCTCCGTGCTCTTCTGGTACTTGCGGATCTCGCGCAGCGCCACGGTCCCGGGCCTGTAGCGGTGGGGCTTCTTCACGCCGCC
GGTGGTCGGGGCCGACTTCCTCGCCGCCTGCAGCACAGATTCAAACCAAACGTCAATCGATTTCGCAACGAACAATCACCGGCAGACGATTCAAGCAGAC
AACTAGGAGTACAACGGAGAGATGCAGAGACGGGAAGGGACGGGAGACGAACCTTGGTGGCGAGCTGCTTCCTGGGGGCCTTGCCGCCGGTGGACTTGCG
GGCGGTCTGCTTGGTACGGGCCATGGCGCCGCTCCTTCCGAGTTCGAACTTGGCTTCTGCGGCTTGTGGATTTGGGGAACTGGATGAGAAAAGTCGACTA
GTGGGAAGATGGTT