Detailed information on CNT30140865


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 5e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672249Lolium perenneSetaria viridis37.7137.0290.05201forward
CNT30552306Lolium perenneOryza glaberrima37.3430.890.95199forward
CNT30669164Lolium perenneTriticum dicoccoides48.9729.2392.72261forward
CNT30149001Lolium perenneBrachypodium distachyon40.5352.391.67216forward

Expression of CNT30140865

Peptides detected in this lncRNA

>peptide 1 (97 aa)
MYTHRNSTFKCSLAGHKVGGESPRIVVDGVGEVVGKVLKWTLTGDDGLHEESKHGEHGEAAVLELLHLKLSECLRVVSQTKGVEAATRVEWVDDLSER

>peptide 2 (49 aa)
IFQVSLVTRYTTFMRKQRTKRSNHVHSYSYGNRDLAFFLIDISCSSIGP*

>peptide 3 (43 aa)
MACTKNPNMENMARRPFLSSFTLSSANASGSSARPRGSKLPPG*

Sequence

>CNT30140865
ATATTTCAAGTTTCGCTGGTAACTAGATATACAACTTTCATGAGAAAACAAAGAACCAAACGATCGAACCACGTCCATTCATATTCATATGGAAATCGAG
ATCTTGCATTTTTCCTTATAGATATTTCGTGTTCCAGCATAGGTCCTTGACGAGCAGAGAAGTTCGCCTCAGCTACAAACATCTTTGATAGTGTACAAAT
GATCACAGCTTAATGATACATCTAGAGTTCAGAGTATATGTATACTCATAGGAACTCGACCTTCAAATGCTCACTTGCCGGGCACAAAGTTGGTGGCGAA
AGCCCACGCATTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCAAGGTTCTCAAGTGGACCCTTACCGGTGACGATGGCCTGCACGAAGAATCCAAACATG
GAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTAAGCTCAGCGAATGCCTCAGGGTCGTCAGCCAGACCAAGGGGGTCGAAGCTGCCACCAG
GGTAGAGTGGGTCGACGATCTCTCCGAGCGGGC