Detailed information on CNT30140682


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30184327Lolium perenneSecale cereale4.255.8793.28119forward
CNT30398990Lolium perenneTriticum turgidum4.6630.8493.94132forward

Expression of CNT30140682

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MNCLNKFEEAFHTKTTHLFSTISCWNSVEDLNTIYCHSLLSTLNCIKSNKQASFIPSGYMKHMLFGFDA*

>peptide 2 (52 aa)
MERMAAAGRTCSATAFPAAAKARKGCGLAWRVGWRLRLGGVRPVAALGGEMEA

>peptide 3 (87 aa)
MKHIWSNGQMLTRTTLFRSNPQTFLYGPVPTYNPLHHLSRRIRVLTTYYVKPEPILACGFTVANEQGCLQSLCSWVAVHKCDAHGGS*

>peptide 4 (42 aa)
MNAICILIMITSLSCSLVVYYMHDAMVKFYGWLNYCEPFKSH*

>peptide 5 (46 aa)
MSKVVYNLFVPGWPSTSAMHTAVHRHDPVATTQHNPSNTNSTQVVH*

>peptide 6 (46 aa)
MPKMWRNILFGLLTNPEFAKVNLGSIFLVQKWQRNFGCSFFFCLFD*

>peptide 7 (38 aa)
PRVNKPAVPLIFSPRLVLSHSLRLAQICKNQVHAAIRQ*

>peptide 8 (35 aa)
MLILVVLDRGFHLQAYAKGITQKGCLILILWTRVL*

>peptide 9 (37 aa)
MWNFKKYFHLSVLDRLLLYIKANFILSFDKSFFFQTN*

Sequence

>CNT30140682
AACCAAGGGTAAATAAACCAGCTGTTCCGCTAATCTTTTCGCCTCGCCTAGTTCTTTCTCATTCGCTCCGCCTTGCCCAAATCTGCAAAAATCAGGTCCA
CGCCGCAATTAGGCAGTAGAAAAATCTCAGCTCCACTATAATACTGCCCCTGCTAGGGTTTCCAGGCCGCCTCCATGGAACCCGCCGCCTGTAGATCCTC
CTCGAGCCGCCTCGCCTCCCGCGGCCGACGGAGGCCGCCGACGGTTTGAGTTATTGCATGTGGTGGCACCAAGCGTGAGGCTACAACTGCATTACTTGCA
AGGAAGTTACAAAATTTATGGATCATCATACCCGTGACTTTCTTGCATGTTGTGCAGTTGCTGTCTCTCTGTTTGCCAGAACTATGATGTGAAGTAGGAA
TTTTAGCCAGGTTCTTTCTCTTGACCAGTAAATCAATTTTGAAAAGTTAATGAAGTAATAACTATATACACAAGGCATATAATATTTGAGAGCAGATGCC
CTTTTTTCAACATTTTTATCTCACTGTTTGATAAGTCCTTTTTAATGAACTGCTTAAATAAGTTCGAGGAGGCATTCCACACTAAAACTACTCACCTGTT
TTCTACAATTTCATGTTGGAACAGTGTTGAAGACTTAAATACTATTTACTGTCACAGTCTGTTGAGTACTCTTAACTGTATAAAGTCCAATAAACAAGCC
TCCTTTATTCCCAGTGGTTACATGAAGCACATGCTCTTTGGTTTTGATGCATAATTTGTTTTACCAAAATTTGACAATGCATATATATTTTCCCTCAGTT
AAGGCTTGTTTGGTTTAACGCAAATAATTACCTTACGAAAATAGCATGCCAAAAATGTGGCGAAATATCCTTTTTGGTTTGTTAACGAATCCAGAATTTG
CTAAAGTAAATTTGGGCAGTATCTTTTTAGTGCAAAAATGGCAGCGAAATTTTGGCTGCAGTTTTTTTTTCTGTTTGTTTGACTAAATATGAAGCCTGCC
ACCTTAGCAAGGCTGAGGTGAGATTAGCCCCTGATGTGGAACTTCAAGAAATACTTTCATTTAAGTGTACTAGATAGATTGCTGCTATACATTAAAGCAA
ATTTTATCCTATCATTTGACAAATCATTTTTCTTCCAGACTAATTAAGCGGTACCACTGATAGACATCAATGAACCTAGACACCACCGATAGACATCAGT
GAGCCTTCCTATTCCATATGATCAACTTAGTTTGGGTGACCTACCCGTGCAGACTCAGACCATAGACACTTGCACCAATTGTCATATCCCTGTTCACCCA
TATGCAGAGGTTGTACAGTTTACCCACATGACCTGGTCTGCTCTTCTTCCATGAAGCACATTTGGTCAAATGGACAGATGTTGACTAGGACAACACTTTT
CCGAAGTAATCCCCAGACCTTTCTCTACGGACCCGTACCAACCTACAATCCCCTACATCATCTGTCACGTAGGATTCGGGTTCTCACAACATATTATGTC
AAGCCAGAGCCCATATTAGCATGTGGCTTTACGGTAGCTAATGAGCAAGGTTGTCTACAATCTCTTTGTTCCTGGGTGGCCGTCCACAAGTGCGATGCAC
ACGGCGGTTCATAGACATGACCCCGTTGCAACCACTCAACATAACCCGAGCAATACTAATTCCACCCAGGTAGTTCATTAAACTTAGTTGTTTTCCATAA
TTCACTAATAAAATCATTTCATAGCATAGCTGAGCAACAACTAAATTTAATGGAGACAAAGTAAGTCAAGTAGGGGTAGCTAGACTACTGGGATTGCATA
GCAAGCATAAAACCCTACACATGTATACCACAAAAATTTCTACTGTGCATAGATAAAAACTGGGACATTTGTGATTGGTGTGTCACTTGCCTGAATAAGG
TGGAGAGTTGGTACAATCTTCACAAGCACACGCGTTGCAGTCGGCAGTCACAATCTATAATCATATAACAATGCACCATAAGCATGGTGCCATACATTGA
CATGCACAAACAGAAAACATGAATGCAATATGTATCTTAATCATGATAACATCTCTTAGTTGTTCTCTGGTTGTCTACTACATGCATGATGCCATGGTCA
AGTTTTATGGTTGGTTGAATTATTGCGAACCATTTAAGTCGCACTAGCGAAGGGCAACTACCATTAATTGTAAAAGGTATTTTGGTACAGTAGACAAATG
TTGATTTTGGTAGTACTGGACAGAGGGTTCCATTTGCAAGCATATGCAAAAGGAATCACTCAAAAAGGGTGTCTAATACTCATTTTATGGACAAGAGTAC
TCTAATTAGGCATTTAAATATGAATGATTTTTAAACTTCTGCAAGTTCACATTGTTTTGTTTCATAATGTTCCTTATATTTTTAGGATTCCAACGATATA
TGATTCGTGATTTTTGGTGGTTATGAATTTTACAAGGCGCGGACTATGTAAATCCTGTTAAAACGGAAACTAGGGTATGTTCATGACACGTGGCGCACTG
CTACTGGTTGATACCCCTTCACGCGGATCACGCTGTTTGCACTGTTGGATCTAACTAACATCTATGGCTGAGATCTAAAGCCAGGGTCTGAGTTGGCCTC
ACCCTGGGCTGAGATGGCGGCGTGGTGGCGCTGATGTGGTCGGTGACGAGGCGATGATGTGGCGCCGGTGATGGAGAGGATGGCGGCGGCGGGTCGGACG
TGCTCGGCGACGGCGTTCCCGGCGGCGGCCAAGGCGCGGAAGGGGTGTGGCTTGGCGTGGCGCGTCGGGTGGAGGTTGCGGCTTGGCGGGGTTCGGCCCG
TGGCGGCGCTAGGCGGCGAAATGGAGGCGGC