« Back to Zea mays search


Detailed information on CNT3014019


BLAST search results

BLAST vs Swiss-Prot:
sp|P23993|PSAL_HORVU, E-value = 1e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30604850Zea maysOryza punctata21.6215.6594.08152forward

Expression of CNT3014019

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MPPKKNPPVNLAQPSAVCSLSASFFLPVSVSVGAVDGSPSLKEATPYMVRQTLRMATRR*

Sequence

>CNT3014019
TTGGGAAAATGGAAATCCTTTGAAAAAATGAGGTTAACAAACTAGCTCTGAATGATGCATCCAATAAGGTAAAAAAAAGTTGAACAGGTTACATCCCAAT
CCATCCATGTGCAAAGCAGAGGAATTACATTTATACACGGCGCTGATCACCGCTGGAGTGAAATGAAACAAGGACCACACCACCTACATACCATGCAGCT
AGAGAGGAGGATCGGCCGGAGCTATATATATACGCATCTTTGATGATTTCTACTTGAAGAAGTAGGGGAGGTCGAGCACGTAGAGGAGAAAGTAGGCCCA
GAGCACGCCGGAGATGCCGCCGAAGAAGAACCCCCCGGTGAACTTGGCCCAGCCGTCGGCGGTCTGCAGCTTGTCGGCCTCCTTCTTCCTGCCGGTGAGC
GTGAGCGTGGGCGCCGTGGACGGGTCCCCCTCGTTGAAGGAGGCGACGCCGTACATGGTGAGGCAGACGCTGAGGATGGCGACGAGGAGGTAGCCGTGCG
CGAGGCCGACCTCGACGCCCCGCAGCAGCGGGCTCACGGCGGTGCGGCTGCTCTTCATCACCTGGCTCGCCATGGGAGCGTAAGCTGTGGCCATCTCCAC
CGACACACACACAGCAGCACGCGCACGGATCGGATCCGCCGGCTAACTCAGATCTGCCTGCAGACGCGACGACTACTGGCCGGTAGGTACTAGCTGAGGA
GGG