Detailed information on CNT30139784


BLAST search results

BLAST vs Swiss-Prot:
sp|M1BJF6|JOKA2_SOLTU, E-value = 5e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670550Lolium perenneSetaria viridis24.2124.9587.79131forward
CNT30519875Lolium perenneSetaria italica24.2119.8287.79131forward
CNT30395922Lolium perenneTriticum turgidum19.9652.1784.26108forward
CNT30364692Lolium perenneSorghum bicolor21.0719.3985.09114forward
CNT30369722Lolium perenneOryza glumipatula22.3723.8289.26121forward
CNT30100073Lolium perenneOryza rufipogon25.3239.4889.78137forward
CNT30575237Lolium perenneOryza barthii25.3231.4989.05137forward
CNT30584006Lolium perenneEchinochloa crusgalli21.0722.5788.6114forward
CNT30495845Lolium perenneDigitaria exilis21.0718.6989.47114forward
CNT30556352Lolium perennePanicum hallii24.2118.2288.55131forward

Expression of CNT30139784

Peptides detected in this lncRNA

>peptide 1 (97 aa)
QRVPFIDATQIIHGLLKVVLVLPQYLLVQINLLEAHLLKLLQQFLFPKTVDVNSLSRHHIHRDTCKRTCWHISWCGHSPWSEFWCKHMKTWHRSSST*

>peptide 2 (88 aa)
SRGSHSLTPHRSSTDCSRLYLFCLSISLFRSTCLKPISSSSCSSFSSLRLSMSTVSAVTTSTGILVSELVGISAGAVTVLGVNSGAST*

Sequence

>CNT30139784
AGCAGAGGGTCCCATTCATTGACGCCACACAGATCATCCACGGACTGCTCAAGGTTGTACTTGTTCTGCCTCAGTATCTCCTTGTTCAGATCAACCTGCT
TGAAGCCCATCTCCTCAAGCTCCTGCAGCAGTTTCTCTTCCCTAAGACTGTCGATGTCAACAGTCTCAGCCGTCACCACATCCACAGGGATACTTGTAAG
CGAACTTGTTGGCATATCAGCTGGTGCGGTCACAGTCCTTGGAGTGAATTCTGGTGCAAGCACATGAAAACTTGGCACAGAAGTAGCAGCACCTGAACTG
GACGAGGGAACATCCACGAGGGGGTACAGACGCATTGCTGCAGATGCAGATTCCTTGGGCTCAGTGGCTTCGTTGTATATTAAGGGCTGCAGTAGTTCTA
CTTCAGCGCTTTTGACATCTTCACCCAAGACGACAGGCTCGATGTTGACATCAATCAAATTAGTAGCGTCTCCGAGGTTGCTTTCCTGAGGCAGATTCAG
GTCTATAGCAGCAGCCCTGTTATCACTGACAAAAGATGGAT