Detailed information on CNT3013906


BLAST search results

BLAST vs Swiss-Prot:
sp|P92519|M810_ARATH, E-value = 1e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30443963Zea maysAegilops tauschii33.528.281.71175reverse complement
CNT30369689Zea maysOryza glumipatula95.438.8288.35498forward
CNT30109053Zea maysOryza longistaminata56.5118.1782.71295forward
CNT30101709Zea maysOryza rufipogon89.4636.9287.15467forward

Expression of CNT3013906

Peptides detected in this lncRNA

>peptide 1 (36 aa)
GCACSVHGTRGSWPMPRRTGCPPEVPLLQRLSRGDH*

>peptide 2 (37 aa)
DVLAPFMEHGVLGQCQGGQAVHPKFHCSNVSPEEITE*

>peptide 3 (45 aa)
RMCLLRSWNTGFLANAKADRLSTRSSTAPTSLPRRSLSRRASQSA*

>peptide 4 (57 aa)
MVESPRNIADDPLHSLLMLRRRSLQEPTNVADGVCQVRPCVDEVAKAPHKTPVLCSIH

>peptide 5 (59 aa)
MYSASQLDMATTCCLNDCQLMGHLPRKKRIPLVLLLVSMSPAWSLSLYPTRCASPGHLG*

Sequence

>CNT3013906
CGGATGTGCTTGCTCCGTTCATGGAACACGGGGTTCTTGGCCAATGCCAAGGCGGACAGGCTGTCCACCCGAAGTTCCACTGCTCCAACGTCTCTCCCGA
GGAGATCACTGAGTAGGCGAGCAAGCCAGAGCGCCTGAGTTGAAGCGGTGGAGGCCGCTATGTACTCGGCCTCGCAGCTGGACATGGCCACCACCTGCTG
CTTGAACGACTGCCAGCTGATGGGGCACTTGCCGAGGAAGAAGAGGATCCCGCTTGTGCTCTTGCTGGTGTCGATGTCGCCGGCGTGGTCGCTGTCGCTG
TACCCGACAAGGTGTGCCTCCCCAGGGCACCTTGGGTAGTAGAGACCATGGTCGAGAGTCCCCGTAACATAGCGGATGATCCTCTTCACAGCCTGCTCAT
GCTTCGTCGTCGGTCGCTGCAGGAACCGACTAACGTAGCCGACGGAGTATGCCAAGTCAGGCCGTGTGTGGACGAGGTAGCGAAGGCTCCCCACAAGACG
CCGGTACTGTGTAGCATCCACC