CANTATAdb - search

Detailed information on CNT30138781

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30697771	Lolium perenne	Oryza sativa	11.69	21.5	94.2	69	forward
CNT30677121	Lolium perenne	Setaria viridis	14.58	21.66	91.86	86	forward
CNT30111027	Lolium perenne	Oryza longistaminata	16.44	22.15	87.63	97	forward
CNT30118046	Lolium perenne	Oryza nivara	13.56	20.46	88.75	80	forward

Expression of CNT30138781

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MLFKSQWSHSVASHWRHPICWHRTRTHRRHAHTTHWRWTTHHTGRSRQ

>peptide 2 (38 aa)
MAGLQHQRWQVYMEIYKLSLHKHLYKWYQSCNSQLNWV*

>peptide 3 (30 aa)
MVPVLQFPTQLGLTTVMLLILSDRNIYSNL*

Sequence

>CNT30138781
AGGCAGTGTAGTTCAAAAAGGTGTTCTTTTTCAGGTAAGAAATCAAACCACTGGACATGAGATCGTAAAGCCTAACAGGTAACATACACACAGTATTTGT
TTGTGTTTATGGCTGGCTTGCAACACCAACGCTGGCAAGTGTACATGGAGATCTACAAACTTTCATTACATAAACACCTATACAAATGGTACCAGTCTTG
CAATTCCCAACTCAACTGGGTCTAACCACAGTCATGCTGCTGATCCTATCCGATCGTAATATATATAGCAACCTGTAATTAACTCAAACTCGGCTAGAGA
TTTCGCTCTCCAAAATTGTCATGGTACCGAAAGAATATTAACTGGAACAACCAATGACGCAGATCTAACAGTTCCAACGAACCAATTTCGCTTGGGATCA
AACCTCATCTGTCTCTGGGTGAACTGAAATATTTGACATCCTTCTATGCTCTTCAAAAGCCAATGGAGCCACTCAGTAGCTTCCCATTGGAGGCATCCCA
TATGCTGGCATCGGACCAGGACCCATAGGCGGCATGCCCATACCACCCATTGGAGGTGGACCACCCATCATACCGGGCGGAGCAGGCAAG