Detailed information on CNT30138306


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 1e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555389Lolium perenneOryza glaberrima50.3244.9784.03313forward
CNT3012274Lolium perenneZea mays99.284.7582.01617forward
CNT30353380Lolium perenneEragrostis tef50.854.8681.33316forward
CNT30367618Lolium perenneSorghum bicolor52.5746.0684.4327forward
CNT30597090Lolium perenneOryza meridionalis38.9152.9585.54242forward
CNT30116475Lolium perenneOryza nivara31.5135.1985.71196forward
CNT30551970Lolium perenneOryza brachyantha28.1419.1786.29175forward

Expression of CNT30138306

Peptides detected in this lncRNA

>peptide 1 (42 aa)
TAKRNVDLFSISPIMLLLLSETFDVFDPKEVVFLASRFIRLW*

>peptide 2 (33 aa)
LLRGTLICSQSLRSCCFCYQKHLMFLIPKKLCS*

>peptide 3 (32 aa)
MRWEVDGGLLELSSQFGQASTGLPPGDCSGYH*

Sequence

>CNT30138306
ACTGCTAAGAGGAACGTTGATCTGTTCTCAATCTCTCCGATCATGTTGCTTCTGTTATCAGAAACATTTGATGTTTTTGATCCCAAAGAAGTTGTGTTCT
TAGCTTCACGTTTCATCAGACTCTGGTAGAACTCCACAACCTCCGGAGCACGGTGTACCTTGTCACCACCGGCAACACTCTTGGATAGAGAACCAGGAGG
TGGTGGTGGAGGAGGAGGTCCACCTGGTGGACGTGGCGGCAGCGGTGCTCCGCCTGCAGTGTTGGTAGCTCCTGAAGCAACAGCTGATGCGGTGGGAGGT
GGACGGGGGACTCTTGGAGCTCTCTTCTCAATTTGGGCAAGCTTCAACTGGGTTACCGCCAGGGGATTGTTCTGGTTATCACTAGATTGCTCGCCGGATT
CAACATTAGCTGCAGGGACCTTCTTCTCCTTTATTTGAGCAAGTTTTGGTGGGAGTGCAGCTCTTGGAGATGGTACTAGAGCTGAGCTATAGCCACCACC
GAACCTTTGTGCTCTAGCTTGCTCAGCCTTCTCTTTGACCGCCTTCTCCCGTTCTGTAGCAAGCTTATGCCTGTCTTTGTAAGCGGGATACTTCTCATCA
GCAAAACCTTCGACAGTCTTTG