Detailed information on CNT30138140


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 9e-102

BLAST vs NONCODE:
NONMEST001181, E-value = 6e-87

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30192776Lolium perenneSecale cereale62.6549.4393.45473forward
CNT30251672Lolium perenneAvena sativa66.626993.04503forward

Expression of CNT30138140

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MRRCWSGGMPSLSWIFAFTLSIVSEDSTSSVMVLPVRVLTKICMPPRRRSTRWRVDSFWML*

>peptide 2 (62 aa)
MARQLLATTETEHQVKGGLLLDVVVCQSAAILKLLAGENEALLVRGDALLVLDLRLHVVNCV*

>peptide 3 (29 aa)
AQIEGSLIHSFNLLDERTAQVCRHRQTQD*

>peptide 4 (46 aa)
MRRCWSGGMPSLSWIFAFTLSMVSEDSTSSVMVLPVRVFTKICICK*

>peptide 5 (84 aa)
LRKLRAHLFIHSICWTSARHKFVDTDKHKTRQHHRSNKENTRHRTHQHQLQDTEGHQTCEVVNPDTEATQWPGNYWPPRRRSTK*

Sequence

>CNT30138140
TTGCGCAAATTGAGGGCTCACTTATTCATTCATTCAATCTGCTGGACGAGCGCACGGCACAAGTTTGTAGACACAGACAAACACAAGACTAGACAACATC
ACCGTAGCAACAAAGAAAACACCAGACACAGGACACACCAACATCAACTGCAGGACACAGAAGGCCACCAGACTTGTGAAGTTGTGAACCCAGACACAGA
AGCAACTCAATGGCCAGGCAATTACTGGCCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGAGTGCGGCCA
TCCTCAAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATTGTGTCTGAAG
ACTCAACCTCAAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATGCCACCACGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTG
GATGTTGTAGTCAGCAAGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTC
GCCTTCACATTGTCGATGGTATCAGAGGACTCGACCTCAAGTGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCATCTGTAAGTAAAAAAGAG
GAGGAGGGCGCCTTCGCTTCGATCGCTCGTAGATTTTTCTGGGGGACGACTGGAT