Detailed information on CNT30137932


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONVVIT002763, E-value = 3e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534084Lolium perenneEucalyptus grandis73.4190.6983.78185forward
CNT30375849Lolium perenneArabidopsis thaliana98.0222.0583247forward
CNT30403132Lolium perenneBeta vulgaris85.3266.9882.33215forward
CNT3096726Lolium perenneSolanum tuberosum57.1460.7688.19144forward
CNT30194314Lolium perenneSecale cereale2525.9387.363reverse complement
CNT30624889Lolium perenneDaucus carota49.632.8986.4125forward
CNT30721902Lolium perenneTriticum spelta43.6554.1988.18110forward
CNT30361575Lolium perenneSorghum bicolor55.1621.7585.61139forward
CNT3024604Lolium perennePopulus trichocarpa57.9415.0486.3146forward
CNT30604869Lolium perenneOryza punctata99.696.1789.24251forward

Expression of CNT30137932

Peptides detected in this lncRNA

>peptide 1 (55 aa)
RLIISDKRPVQDCDRTSQHSLHWASCHALCNLGPVHCHGLGAAHITVDNWWLDTP*

Sequence

>CNT30137932
TCGGCTGATCATTTCTGACAAAAGACCAGTTCAGGATTGTGACAGGACCAGTCAACATTCCCTTCATTGGGCGAGCTGTCATGCTCTGTGCAACCTGGGA
CCAGTACACTGTCATGGGCTTGGGGCGGCTCACATCACCGTAGATAATTGGTGGCTTGACACACCTTGATCCATAAGATTGCACCCAGCCATTGGCAGTG
AATGCAAAACCAGAGAGCTGCTCGCCAAAGTACTCAACCATGTCGTTTCTCT