Detailed information on CNT30137856


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 3e-175

BLAST vs NONCODE:
NONMTRT001605, E-value = 2e-20

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30394768Lolium perenneTriticum turgidum69.4164.2986.05767forward
CNT30441267Lolium perenneAegilops tauschii52.3179.0787.2578forward

Expression of CNT30137856

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MGCPRKPAWLSRLSCALRHGPLRREPMVPHSSLPCRRRSRRKWTWWWSSLSF*

>peptide 2 (36 aa)
MHKAGVAKVVESTLAEDLGASLEPHGLSKVDTVAGK*

>peptide 3 (38 aa)
CAHKTPKGTDFRKRHILHENPGNLHHHGSTDQTKRCVP*

>peptide 4 (43 aa)
MACTKKPNMENMARRPFLSSFTLSSAKASGSSARPRGSKLPPG*

>peptide 5 (44 aa)
ALIKHQKARTSERGIFYMKILVIYIIMVVQIKPNGVFREIHRVS*

Sequence

>CNT30137856
TGCGCTCATAAAACACCAAAAGGCACGGACTTCAGAAAGAGGCATATTTTACATGAAAATCCTGGTAATTTACATCATCATGGTAGTACAGATCAAACCA
AACGGTGTGTTCCGTGAAATACACCGTGTGTCCTGACACAACTACAACTCGCAGCCGTCAACAACTAATTACTTGCCGGGAACAAAGTTGGTGGCGAAAG
CCCATGCGTTATTGTTGACAGGGTCGGCAAGATGGTCGGCCAGGTTCTCTAGTGGGCCCTTGCCGGTGACAATGGCCTGCACAAAGAAGCCGAACATGGA
GAACATGGCAAGACGGCCATTTTTAAGTTCCTTCACCTTGAGCTCCGCGAAAGCCTCAGGGTCATCGGCAAGACCGAGGGGGTCGAAGCTGCCGCCAGGG
TAGAGTGGGTCAACGATCTCACCGAGCGGGCCACCAGCAACACGATACCCCTCGACGGCACCCATGAGCACAACCTGACAGGCCCAAATAGCGAGGATGC
TTTGGGCATGCACAAGGCTGGGGTTGCCAAGGTAGTCGAGTCCACCCTCGCTGAAGATTTGGGAGCCAGCCTTGAACCACACGGCCTCTCCAAAGTTGAC
ACCGTTGCGGGCAAGTAGCTCGGGGAAGACGCAGCCAAGCGCACCGAGCATAGCCCACCTGGAGTGGATCACCTCCAGCTCACGGTTCTTGGCGAACGTC
TCGGGGTCAGCCGACAGCCCAGCAGTGTCCCACCCATAGTCACCGGGGAACTCGCCGGTCAAGTAGCTTGGGGGCTCGCCGGAAAGCGGGCCGAGATAGA
GCACACGGTCAGCGCCGTACCATGGGCTGCCCGAGGAAACCTGCTTGGCTTTCGCGGCTGTCTTGCGCATTGAGACACGGGCCTCTCCGAAGAGAGCCGA
TGGTGCCGCATTCTTCACTGCCTTGCCGGCGAAGGTCGAGGAGGAAATGGACATGGTGGTGGTCGTCATTGAGCTTCTAAGACTGATTTTGTGTTGTATG
TTCTCCTAAGATCTATAATCGTGTGTGTGTGTGGAGATGGCTTAAGATGTGAGGAGGATGGAGTTATTTATGGCACCGGAGATGACACAGGGGAGTGAGC
TTTGC