Detailed information on CNT30137839


BLAST search results

BLAST vs Swiss-Prot:
sp|P07369|CB2G_SOLLC, E-value = 4e-142

BLAST vs NONCODE:
NONMTRT001605, E-value = 4e-23

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534338Lolium perenneEucalyptus grandis74.2850.4984.89569forward
CNT30709151Lolium perenneGlycine max61.3665.6484.47470forward
CNT30508703Lolium perenneSolanum lycopersicum75.4661.0382.87578forward
CNT30149090Lolium perenneBrachypodium distachyon66.4552.1586.25509forward

Expression of CNT30137839

Peptides detected in this lncRNA

>peptide 1 (38 aa)
KQKYCAHKTPKGTDFRKRHIFHENPRNLQHHGSTNQTK*

>peptide 2 (36 aa)
MDKAGVAEVVESTLAEDLGASLEPHGLSKVDTVAGK*

>peptide 3 (48 aa)
MMQNTPRVGLKQLQVAAVKNFLLAGNKVGGKSPCIVVNGVGKMVGQVL*

>peptide 4 (44 aa)
MVVQIKPNDAKYTTCRPETAASRSRQELLTCREQSWWQKPMHCC*

>peptide 5 (43 aa)
MACTKKPNMENMARRPFLSSFTLSSAKASGSSARPRGSKLPPG*

Sequence

>CNT30137839
TAAAACAGAAATATTGCGCTCATAAAACACCAAAAGGCACGGACTTCAGAAAGAGGCATATTTTCCACGAGAATCCTCGTAATTTACAACATCATGGTAG
TACAAATCAAACCAAATGATGCAAAATACACCACGTGTAGGCCTGAAACAGCTGCAAGTCGCAGCCGTCAAGAACTTCTTACTTGCCGGGAACAAAGTTG
GTGGCAAAAGCCCATGCATTGTTGTTAACGGGGTCGGCAAGATGGTCGGCCAGGTTCTCTAGAGGGCCCTTGCCGGTGACAATGGCCTGCACAAAGAAGC
CGAACATGGAGAACATGGCAAGACGGCCGTTTTTAAGTTCCTTCACCTTGAGCTCCGCGAAAGCCTCAGGGTCATCGGCAAGACCGAGGGGGTCGAAGCT
GCCGCCAGGGTAGAGTGGGTCAACGATCTCACCGAGCGGGCCACCAGCAACACGATACCCCTCGACGGCACCCATGAGCACAACCTGACAGGCCCAAATA
GCGAGGATGCTTTGGGCATGGACAAGGCTGGGGTTGCCGAGGTAGTCGAGTCCACCCTCGCTGAAGATTTGGGAGCCAGCCTTGAACCACACGGCCTCTC
CAAAGTTGACACCGTTGCGGGCAAGTAGCTCGGGGAAGACGCAGCCAAGCGCACCGAGCATAGCCCACCTGGAGTGGATCACCTCCAGCTCACGGTTCTT
GGCGAACGTCTCGGGGTCAGCCGACAGCCCAGCAGTGTCCCACCCATAGTCACCGGGGAACTCGCC