CANTATAdb - search

Detailed information on CNT30137534

BLAST search results

BLAST vs Swiss-Prot:
sp|O22259|ERF71_ARATH, E-value = 9e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30338289	Lolium perenne	Eragrostis tef	16.83	42.39	82.91	117	forward

Expression of CNT30137534

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MLPTRTCPPSWAKGTPPAEQQLPVPRCTKRRAQRPRRWGRCLARRGRP*

>peptide 2 (58 aa)
MIRARETAGSSRRSSIEWPARPRGQRRRQARPPPRPPCTGLQESSCSSRTPSAPRRAP*

>peptide 3 (32 aa)
ISALGDTMDMNMTIPPIEESANKMIRAPPERN*

Sequence

>CNT30137534
ATTTCTGCTCTGGGAGATACAATGGACATGAACATGACAATACCTCCGATTGAGGAATCAGCAAATAAGATGATACGCGCGCCGCCAGAAAGAAATTAAG
AACAGTTTCCGAACTGCAAATGGAGTAAATTACACGTTTAGTTTGCACGAAGAACATGCGAAATAAAAATCTGACAACACGTATACAACAGTTGCGAATT
GAAAGAAGAAAAAAATGACGCGGCTGATTTCTAACTCTAGTGCGACCAGAGCTGGAGAGACGCCGTATGATCAGAGCTCGAGAGACGGCGGGTAGTAGTC
GTCGAAGCTCCATAGAGTGGCCGGCGCGTCCTCGGGGACAACGGCGGCGGCAGGCGCGGCCGCCTCCCCGCCCTCCATGTACGGGACTCCAAGAAAGTTC
ATGTAGTTCTCGTACGCCATCAGCTCCTCGGAGAGCTCCTTGACCTCGCCGGAGCATGCTGCCGACTCGCACTTGTCCTCCTTCTTGGGCGAAAGGAACA
CCGCCGGCGGAGCAGCAACTGCCGGTGCCACGGTGCACGAAGCGGCGCGCGCAGCGGCCTCGGCGGTGGGGTAGGTGCCTAGCCAGACGCGGACGCCCTT
GACAGGGTCGCGAATCTCCGCCGCCCACTTCCCCCATGGCCGCTGCCGAATGCCGCGGTACCGGTTCTTCCGCTCACGCTTTGTCACGCGGCGCG