Detailed information on CNT30137210


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30645139Lolium perenneCannabis sativa8.3127.178875reverse complement
CNT30594407Lolium perenneEragrostis curvula6.3120.0791.2357reverse complement

Expression of CNT30137210

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MDICHSGSGHLYSFSTIMLTLKSCTLISDTLFYFSVTEVQERSC*

>peptide 2 (47 aa)
MSIYSNVPILCAMCSCPSCDVPGSIPSILILCLDRPRLSVCKLMSCV*

>peptide 3 (38 aa)
PLLLCYLDNKCPSIAMSPFCVLCVHVPLVMSPVVYLAY*

>peptide 4 (35 aa)
MQATVLYIQVNGHGSCNYPAYTVLYTHLCNVPLII*

>peptide 5 (42 aa)
MISCCNRTRPKEAVGAGESTLLFGEANYYRLLTEICVLKGYK*

>peptide 6 (48 aa)
MQANVLRIELSCSCPLVMSPGSIPSILISCSDRPRLPSVCKLLSCTYK*

Sequence

>CNT30137210
CCCTCTTCTTCTTTGCTACCTTGACAACAAATGTCCATCTATAGCAATGTCCCCATTTTGTGTGCTATGTGTTCATGTCCCTCTTGTGATGTCCCCGGTA
GTATACCTAGCATACTAATTTTGTGTTTAGATCGACCCAGGCTTTCTGTATGCAAGCTAATGTCTTGCGTATAGAACTAAGTTGTTCATGTCCTCTTGTG
ATGTCCCCCGGTAGTATACCTAGCATACTAATTTCGTGTTCAGATCGACCCAGGCTACCTTCTGTATGCAAGCTACTGTCTTGTACATACAAGTAAATGG
TCATGGAAGTTGTAACTACCCAGCATATACTGTATTGTATACTCATCTATGTAATGTTCCATTGATAATTTGATACTGTCAAAGTGATGATGCCATGGAT
ATTTGTCACTCAGGTTCTGGCCATCTTTATTCTTTTTCTACTATCATGCTCACACTAAAATCATGCACTCTCATTTCTGACACATTGTTCTACTTTTCTG
TGACAGAGGTTCAAGAAAGAAGCTGCTGAGAAGAACAAGAGGTCTTCAAGTATGCTGGGAGGTTGACAAGCTTAAGGAAGCAGATCATCAGCATGCCCTC
CTTGCTTTCACCTTTGGAGTGAAGCAGATGATCTCCTGCTGCAACAGAACTAGACCAAAGGAAGCAGTAGGTGCAGGTGAAAGCACATTGTTATTCGGCG
AGGCCAACTACTACAGGCTGCTCACCGAGATTTGCGTACTCAAAGGATACAAGTGATCTGGTTTTCAGAAGTTGGGGCGAGGAAAAACGCTTGAAGAGCG
TATGTTATGTTGAAACTAGTTCTTGGAACTAGCATTTTTGGTAGATGGTCCTAGTTCATGTGTGTGAACTTGTAATGTACTGCTGAGAGAAACTTGTGAT
TAT