« Back to Lolium perenne search


Detailed information on CNT30136796


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XEK7|RS16_SYNRU, E-value = 3e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696918Lolium perenneOryza sativa23.5732.2690.06161forward
CNT30515426Lolium perenneJuglans regia31.7716.5182.95217forward
CNT30391876Lolium perenneTriticum turgidum12.4537.9594.1285forward
CNT30562499Lolium perenneActinidia chinensis12.1537.3985.5483forward
CNT3083687Lolium perenneVigna radiata30.0121.5680.98205forward
CNT30555554Lolium perenneOryza glaberrima29.8724.9788.24204forward
CNT30438780Lolium perenneAegilops tauschii30.3125.7890.82207forward
CNT30247768Lolium perenneAvena sativa38.2142.9389.66261forward
CNT30663140Lolium perenneTriticum dicoccoides30.313091.3207forward
CNT30472632Lolium perenneSaccharum spontaneum29.874.1789.71204forward
CNT30721366Lolium perenneTriticum spelta21.3828.488.36146forward
CNT30365247Lolium perenneSorghum bicolor20.0620.1888.32137forward
CNT30151249Lolium perenneBrachypodium distachyon17.5723.0392.5120forward
CNT30104226Lolium perenneOryza rufipogon16.5423.6490.27113forward
CNT30581659Lolium perenneEchinochloa crusgalli27.0928.7387.57185forward
CNT30117820Lolium perenneOryza nivara29.8726.1588.24204forward
CNT30176592Lolium perenneVigna angularis30.0125.1582.93205forward

Expression of CNT30136796

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSLTSFLVASSTYFWQYATSDLAMAWRME*

Sequence

>CNT30136796
CATGTCGAGGCAATGAAGGAAACTCAACAGGACAGTCAGTCTCATCCTTTTAACATAATATTGAAATAACATAATCCGTCCAATTAAGCACGAAGCAAAA
CGATATTGCATAGGCAACTCACGAGTCTTAGAGAAGACCACATATCCTATTCATTGTTGTCCAAAAGATGCGAAACTACATGGGCTAAACTGCTCGATAG
TAGATAGATAGGCAGTCGAGGATTGCACCAACGGCGCCACCATACCCAAAAAAAATTCAACGGTACGACTTCTGGAAGCGCGAGCGGGCACCACGTCCCC
CGAACTTCTTGGGCTCGCAGCGGCGCGGGTCGGCGACGAGGAGGGTGCGGTCGTAGCGGGCGAAGATGTCCTTGACCTCCTTCTTGGTGGCCTCGTCGAC
GTACTTCTGGCAGTACGCAACGAGCGACTTGGCGATGGCCTGGCGGATGGAGTAGATCTGGCTGGTGTGGCCTTGAGCCGCAGCATCTCCGGGCGGATGA
GCTCGATGGGCACGCCGTCGACCTTGATCAGCCCGCGGCCCGGCTTGCAGTAGGCCACGGCCACCGCGGTCTTCTTCCGGCCGAAGCACTGCACGGTGCC
CGGGGCCGGGCGGGAGAGGACCGACATGGCTGCTCCGGTGGCGCGGCGGCGGGCAGCGCGGCGGCGCGGGTGAGGGGTTTGGG