Detailed information on CNT30136754


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43766|NLTP3_HORVU, E-value = 3e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697225Lolium perenneOryza sativa31.477.1787.6773forward
CNT30677319Lolium perenneSetaria viridis51.2943.5984.87119forward
CNT30523964Lolium perenneSetaria italica60.3444.0383.57140forward
CNT30440524Lolium perenneAegilops tauschii29.318.9192.6568forward
CNT30342137Lolium perenneEragrostis tef56.943.8586.36132forward
CNT30597201Lolium perenneOryza meridionalis54.315086.51126forward
CNT30371399Lolium perenneOryza glumipatula60.3433.185.71140forward
CNT30104115Lolium perenneOryza rufipogon60.3446.5184.29140forward
CNT30578372Lolium perenneOryza barthii46.557.986.11108forward

Expression of CNT30136754

Peptides detected in this lncRNA

>peptide 1 (50 aa)
LLQSVDMLMGKGTLTPHLAGAPATTPRSTDLTLPARLLRQRHTAWRWPCC*

>peptide 2 (65 aa)
LVAVGGHADGEGHIDAALGGRAGDDAEVDGLDAAGEALEAAAHRLAVALLLAAIDDLTRSISLRC*

Sequence

>CNT30136754
CTTGTTGCAGTCGGTGGACATGCTGATGGGGAAGGGCACATTGACGCCGCACTTGGCGGGCGCGCCGGCGACGACGCCGAGGTCGACGGACTTGACGCTG
CCGGCGAGGCTCTTGAGGCAGCGGCACACCGCCTGGCGGTGGCCTTGCTGCTAGCCGCCATCGATGATCTGACGAGATCGATTTCTCTGCGTTGCTAAGT
GAGTGTACTGGCGTACGTTGGTGGAAGAGAGG