CANTATAdb - search

Detailed information on CNT30136268

BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 8e-102

BLAST vs NONCODE:
NONMEST001181, E-value = 4e-75

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30395844	Lolium perenne	Triticum turgidum	86.1	30.83	92.03	477	forward

Expression of CNT30136268

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MPSLSWILALTLSMVSEDSTSRVMVLPVRVLTKICMPPRRRRTR*

>peptide 2 (61 aa)
MPSLSWILALTLPMVSEDSTSRVMVLPVRVFTKICICRQESPNKFDEPRCDRRRNWLGICSF

>peptide 3 (55 aa)
TKTLTDRHGGGAPGGGWTPSGCCSRRGCGHPPIACLQRSGAAGQGGCPPCPGSWP*

>peptide 4 (61 aa)
LRHLLTATEAEHQVEGGLLLDVVVGEGAAILQLLACKDQALLVRGDALLVLDLGLDIVNGV*

Sequence

>CNT30136268
CACTAAGACACTTACTGACCGCCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCCAATT
GCTTGCCTGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCTGAAGACTCCACCTC
AAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATGCCACCCCGAAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAG
TCAGCAAGGGTCCTTCCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACAT
TGCCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATCTGCAGACAAGAATCACCAAATAAATT
CGACGAGCCTAGATGCGATCGGAGACGAAATTGGTTGGGGATTTGTTCGTTCTG