Detailed information on CNT30136185


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30184336Lolium perenneSecale cereale85.7482.7285.66565forward
CNT30295231Lolium perenneTriticum aestivum72.5391.0586.4478forward
CNT30392448Lolium perenneTriticum turgidum81.64103.4685.87538forward
CNT30439146Lolium perenneAegilops tauschii67.98102.9985.71448forward
CNT30256341Lolium perenneAvena sativa79.06102.7690.4521forward
CNT30662351Lolium perenneTriticum dicoccoides83103.0185.92547forward
CNT30352984Lolium perenneEragrostis tef27.4730.9487.29181forward
CNT30103845Lolium perenneOryza rufipogon18.9728.0384.8125forward
CNT30578311Lolium perenneOryza barthii18.5127.2382.79122forward

Expression of CNT30136185

Peptides detected in this lncRNA

>peptide 1 (97 aa)
EEEVQLTEGKYKPLTYKYSVLFNIPGTKNQTSGHEALTYNIQGSVYVHGWQHQRHQVYIQNVYRLFYHTTYTNGTSPPPLALQLNLIILILPDHNIL*

>peptide 2 (46 aa)
MQASDQDPSGAYPFHPSEACPFRPSEEDHPYQVVQAKREGAIEHTCS

>peptide 3 (62 aa)
MQTVNPSVASHWRHPVCRHRTRTHRGHTHSTHRRHAHSAHRRRTTHTRWCRQSEREQLSIHVL

>peptide 4 (38 aa)
MFMAGNTNATKCTFKMSTDSFITQPIQMVPVLHLSLFS*

Sequence

>CNT30136185
GGAGGAGGAGGTACAGCTTACAGAAGGTAAATATAAACCATTAACATACAAATACAGTGTGTTGTTCAACATTCCAGGTACAAAAAATCAAACCTCTGGA
CATGAGGCATTAACATATAACATACAGGGCAGTGTTTATGTTCATGGCTGGCAACACCAACGCCACCAAGTGTACATTCAAAATGTCTACAGACTCTTTT
ATCACACAACCTATACAAATGGTACCAGTCCTCCACCTCTCGCTCTTCAGCTGAACCTAATCATCCTCATCCTACCCGACCATAATATACTGTAACCAGT
AAATTAACTCAGTACCTCGGCTAGGGATATTGCTCGCCAAAATTGTCCTGGTACCAAAAGAATATTAATTGAAAAACCAATAGCCCAAATCTACAACTTC
AAAGATACCTCGGGATCATCGTGCATCCCTGTGTAAACTGAAACAATCGACAGTCATCTATGTTCTTCAAATGCAAACTGTAAATCCCTCAGTAGCTTCC
CATTGGAGGCATCCCGTATGCAGGCATCGGACCAGGACCCATCGGGGGCATACCCATTCCACCCATCGGAGGCATGCCCATTCCGCCCATCGGAGGAGGA
CCACCCATACCAGGTGGTGCAGGCAAAGCGAGAGGGAGCAATTGAGCATACATGTTCTG