Detailed information on CNT30136184


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553132Lolium perenneOryza glaberrima22.4712.7286.24109forward
CNT30340753Lolium perenneEragrostis tef21.4420.9387.5104forward
CNT30369972Lolium perenneOryza glumipatula22.479.8886.24109forward
CNT30575936Lolium perenneOryza barthii22.4715.7785.32109forward
CNT30579074Lolium perenneEchinochloa crusgalli20.4111.8387.8899forward
CNT30116167Lolium perenneOryza nivara22.4715.5985.32109forward

Expression of CNT30136184

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MVGCAAASSKADMPCHEKSGRASLDWELSVASASSFMKDGACTSSSSTRFTTGVV

>peptide 2 (56 aa)
SQDYLLIYSVFTTSPHGMDGCAGTRPRRTICSRREGSCRRSSRGPRPGRRSARRRR*

>peptide 3 (73 aa)
MRLRPWPLRGLLDLELWGGDGGVRRGVVEGGHALPREVRQGVAGLGALGGLGLVFYEGRRVHFLVVDEVHDRCC

Sequence

>CNT30136184
TTTCACAAGACTACCTACTGATCTACTCCGTATTTACAACATCACCACACGGCATGGACGGATGCGCTGGAACAAGGCCTAGAAGGACAATCTGCAGTCG
TCGAGAAGGCAGCTGTCGTCGAAGCTCCAGAGGCCCAAGGCCGGGTCGTCGCTCTGCACGGCGTCGGCGCTGAAGAGGCTGTCGAGGGACTGGTAGGCGC
TGCCGTCGAAGAAGGGGAACTGGTCTGAGAAGAGGAGGGCGTCGAAGAGCGCGTCGGTGTCATGCGGCTCCGTCCTTGGCCGCTTCGTGGGCTGCTCGAT
CTCGAGCTCTGGGGCGGGGATGGTGGGGTGCGCCGCGGCGTCGTCGAAGGCGGACATGCCCTGCCACGAGAAGTCCGGCAGGGCGTCGCTGGACTGGGAG
CTCTCGGTGGCCTCGGCCTCGTCTTTTATGAAGGACGGCGCGTGCACTTCCTCGTCGTCGACGAGGTTCACGACCGGTGTTGTCG