Detailed information on CNT30136078


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673222Lolium perenneSetaria viridis84.5634.7188.13219forward
CNT30521178Lolium perenneSetaria italica20.0810.6388.4652forward
CNT30513228Lolium perenneJuglans regia56.3718.7784.93146forward
CNT30403349Lolium perenneBeta vulgaris79.9259.4885.02207forward
CNT30249492Lolium perenneAvena sativa45.1734.3182.91117forward
CNT309700Lolium perenneZea mays35.9128.788.1793forward
CNT30650401Lolium perenneRosa chinensis84.5624.8684.93219forward
CNT30689645Lolium perenneTriticum urartu34.3620.9492.1389forward
CNT30721247Lolium perenneTriticum spelta78.3838.6791.13203forward
CNT30367469Lolium perenneSorghum bicolor81.4730.2789.57211forward
CNT3022975Lolium perennePopulus trichocarpa58.322.4785.43151forward
CNT30148668Lolium perenneBrachypodium distachyon74.1362.9592.19192forward
CNT30118099Lolium perenneOryza nivara77.2224.5487200forward

Expression of CNT30136078

Peptides detected in this lncRNA

>peptide 1 (46 aa)
VSNLLCRGDPGGVDVIDRRQGQCQLRMSRPRGRQRGASRQNGSSQW*

>peptide 2 (43 aa)
MPAPYVTPSRKTERSFSSEREFSMVMTSASMLMMEWMISLKLE*

Sequence

>CNT30136078
CGGTCAGCAATCTCCTCTGTAGAGGGGATCCTGGGGGAGTGGATGTCATAGATCGACGCCAGGGCCAATGCCAGCTCCGTATGTCACGCCCTCGCGGAAG
ACAGAGAGGAGCTTCTCGTCAGAACGGGAGTTCTCAATGGTGATGACATCGGCATCCATGTTAATGATGGAGTGGATGATATCGTTGAAGTTGGAGTAGC
ACATGTGGGTGTGGATCTGCCCAGCAAAACAAGATCAATCAGGGTGATCCCAAGAAAGA