Detailed information on CNT3013604


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84RL7|PIP21_MAIZE, E-value = 3e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676770Zea maysSetaria viridis6.7944.0890.3293forward
CNT30524031Zea maysSetaria italica5.1125.4592.8670forward
CNT30531266Zea maysEucalyptus grandis6.2820.3383.7286forward
CNT30546615Zea maysIpomoea triloba7.0135.6986.4696forward
CNT30375565Zea maysArabidopsis thaliana6.234.4183.5385forward
CNT30385683Zea maysTriticum turgidum9.5659.0196.18131forward
CNT30568277Zea maysActinidia chinensis4.5320.6798.3962forward
CNT30586754Zea maysMusa acuminata6.7934.4493.5593forward
CNT3085023Zea maysVigna radiata8.6924.5985.71119forward
CNT30552571Zea maysOryza glaberrima7.9643.0896.33109forward
CNT30436848Zea maysAegilops tauschii7.5235.0392.23103forward
CNT30254684Zea maysAvena sativa6.539.5697.7589forward
CNT30657898Zea maysTriticum dicoccoides12.0422.5790.91165forward
CNT30612661Zea maysArabis alpina5.8427.6886.2580forward
CNT30232947Zea maysAnanas comosus4.626.5893.6563forward
CNT30218729Zea maysKalanchoe fedtschenkoi4.5321.3888.7162forward
CNT30681461Zea maysTriticum urartu10.0732.6291.3138forward
CNT30595794Zea maysOryza meridionalis4.628.7793.6563forward
CNT30575194Zea maysOryza barthii5.0433.6694.269forward
CNT30113851Zea maysFicus carica4.3121.396.6159forward

Expression of CNT3013604

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MEMMACMHRKIRPELFNYMSGPGVMPMVGP*

>peptide 2 (31 aa)
MGAVKKMQCFLSRLHNGDDGMHAQKDKAGAL*

>peptide 3 (36 aa)
MDILLPFCICCATPFPLSARERKFSFFTCAMYIAEI*

>peptide 4 (40 aa)
MHGPWKNKIVRRRIFQKQNKNSIKRNTSVYGKEIHLGWSK*

>peptide 5 (41 aa)
PLTRSTTRPEICLLLLCRQWRSVDGSGKKNAVLSFASAQWR*

>peptide 6 (46 aa)
MFHRVCVNNGHYHDYESLNDAGVLVLVSDECQKIWSSRILTQHMID*

>peptide 7 (35 aa)
MEQIIDVLLSANCCGLAASLKICASFKICASHSAA*

Sequence

>CNT3013604
CGCCACTGACCCGTAGCACTACCCGGCCCGAAATTTGTTTACTGTTGCTGTGCCGTCAATGGCGGTCAGTGGATGGGAGCGGTAAAAAAAATGCAGTGCT
TTCTTTCGCGTCTGCACAATGGAGATGATGGCATGCATGCACAGAAAGATAAGGCCGGAGCTCTTTAATTATATGTCCGGGCCGGGGGTGATGCCGATGG
TTGGCCCCTAGCCTGACCATGACGTGGATGCACTCCCACTCGAATGTTCCACCGAGTGTGCGTTAATAACGGTCATTATCACGACTATGAAAGCCTTAAT
GACGCAGGGGTGCTAGTACTGGTGAGTGATGAGTGCCAGAAGATTTGGAGCTCACGCATCCTGACACAACACATGATTGATTGATTCGCCGGCCTTCCAC
ACGTTTTAACTTTATGAAGATTTTAATCCTCATGGAAGCCACGAACAGAGTAATTTAGAGCAGTACATAAACATGCATGGTCCATGGAAGAACAAAATAG
TCCGCAGGAGAATCTTTCAAAAACAAAACAAAAATAGTATAAAACGAAACACTTCAGTCTACGGCAAAGAAATTCATCTTGGATGGAGCAAATAATAGAT
GTGCTGCTGAGTGCTAACTGTTGTGGCCTTGCTGCTAGCTTGAAAATATGTGCTAGCTTCAAAATATGTGCTAGCCACAGCGCTGCGTAGCACAGCCGAT
CAAGAAAAAATGGATATTCTCCTGCCTTTTTGTATTTGTTGTGCTACTCCTTTCCCTCTCTCTGCCCGTGAACGGAAATTTTCTTTTTTCACGTGCGCCA
TGTACATTGCCGAGATTTGAGCATGTTAGCTAGCATAACTTGAGCTCTAATTAAGCTCGCCTGGGACTCAACTTACGACTGATGCCAACTGATTAAGACA
AGCGAACTTTTAAGCTAGTTTTAAAAATAAAATACTACTACTCCCAACAAACAGCTACTTACTAGCAGGTAGCAGCAGACCGAGGGTCGAGACAAAAACA
AAACAAAAAAAAAAGGAGAAGGCGGTGGCGTTGGTCGGGTGCTCACCGGGACGTGGGAGTCGCGGGCGTTGCGCTTGGGGTCGGTGGCGGAGAAGACGGT
GTAGACGAGCACGAAGGTGCCGATGATCTCGGCGCCGAGGCCGGTGCCGCGGGAGTAGCCGGAGGCGAGCGAGTTGGCGCCGCCGACGCCGCAGATGGCG
CCGAGGCACTGCGCCACGATGTAGAGCAGCGCGCGCACCAGGGAGACCTTGCGCGCCAGGAAGAGGCCGAAGGTGACGGCGGGGTTGATGTGGCCCCCCG
AGATGCCGGCGGTGCAGTAGACGAGGACGAAGATCATGCCGCCGAAGGCCCAGGCGATGCCCAGCACGCC