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Detailed information on CNT30135597


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09020|PR4_PHAVU, E-value = 2e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524561Lolium perenneSetaria italica34.0415.1185.8176forward
CNT30639598Lolium perenneNymphaea colorata20.517.7682.08106forward
CNT30533654Lolium perenneEucalyptus grandis23.2124.4986.67120forward
CNT30549812Lolium perenneIpomoea triloba28.0527.281.38145forward
CNT30514302Lolium perenneJuglans regia20.518.5692.45106forward
CNT30180424Lolium perenneSecale cereale31.5325.1996.32163forward
CNT30221624Lolium perenneHordeum vulgare31.7224.1995.12164forward
CNT30386243Lolium perenneTriticum turgidum47.5836.3491.06246forward
CNT30249706Lolium perenneAvena sativa61.1248.7791.14316forward
CNT30467515Lolium perenneSaccharum spontaneum29.2120.5288.08151forward
CNT307034Lolium perenneZea mays29.0119.0188.67150forward
CNT30624138Lolium perenneDaucus carota20.1219.5185.58104forward
CNT30346089Lolium perenneEragrostis tef29.5927.2288.89153forward
CNT30597257Lolium perenneOryza meridionalis29.0130.0693.33150forward
CNT30371492Lolium perenneOryza glumipatula29.0127.9392.67150forward
CNT30108688Lolium perenneOryza longistaminata29.0126.7493.33150forward
CNT30104475Lolium perenneOryza rufipogon29.0126.6993.33150forward
CNT30578401Lolium perenneOryza barthii29.0126.8393.33150forward
CNT30581754Lolium perenneEchinochloa crusgalli29.0119.6188150forward
CNT30118085Lolium perenneOryza nivara29.0128.0993.33150forward

Expression of CNT30135597

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MIYDVNSPLFRSFLSQKGGPSSDKRKMEEQKPKDQRFKANENKPVMNE*

>peptide 2 (37 aa)
YKAIQKIPSHPQIDSPHLPQTLAELHTGGGGEEEEAR*

>peptide 3 (35 aa)
MVWISYPVCLMALSLELFHACQLICPRMCCEALGLF

Sequence

>CNT30135597
TACAAAGCCATCCAGAAAATCCCCTCCCACCCTCAAATCGACAGCCCCCATCTCCCACAAACCCTAGCTGAGCTCCACACCGGCGGCGGCGGCGAAGAAG
AAGAAGCAAGATGATCTACGACGTGAACTCCCCCCTGTTCCGATCCTTCCTCAGCCAGAAGGGCGGCCCGTCCTCCGACAAGAGGAAAATGGAAGAGCAA
AAGCCAAAGGACCAGAGGTTCAAGGCCAACGAGAACAAGCCTGTGATGAATGAATGAGCGCTGTTTGAACAGTTTGCTGCTTTGCAAGGAATAGTTGCCA
ATCATGTGACTCCTACTATGTTAAAACCTATTCTGTGCTATCTAAGTTGTTTTAGCTGAACATTATGTGTGAAATGGTAACTAAGGGCACTTTTGTCGTG
TGATCTGTTATGGTATGGATATCATACCCTGTTTGCTTGATGGCACTGTCTCTTGAGCTTTTTCATGCATGTCAATTGATTTGCCCTAGGATGTGCTGTG
AGGCCCTTGGTCTCTTT