Detailed information on CNT30135479


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9M2T2|PP16A_ARATH, E-value = 2e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523112Lolium perenneSetaria italica28.5729.6889.2398forward
CNT30293057Lolium perenneTriticum aestivum15.5825.891.71217forward
CNT30437732Lolium perenneAegilops tauschii16.1532.7592225forward
CNT30455685Lolium perenneSaccharum spontaneum28.7927.5488.53401forward
CNT3014485Lolium perenneZea mays7.1147.684.8599forward
CNT30363948Lolium perenneSorghum bicolor19.6789.5488.69274forward
CNT3099938Lolium perenneOryza rufipogon20.3226.788.69283forward
CNT30580297Lolium perenneEchinochloa crusgalli28.5729.289.95398forward

Expression of CNT30135479

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MPGCGRRGGRWARAGASAGRRRARRARRPPSWRAG*

>peptide 2 (63 aa)
MWTSPTSRSPRARSARSSTWREPAALAGTVKRSVAFHAGLRPPRRSVGTRWRERGSPESATSA*

>peptide 3 (54 aa)
MANDRVEDRWGRGIRPCEIGWLRICELVGGGQIWVLEEEEDLGLLGRQGRLVLYT

>peptide 4 (38 aa)
QKYTLLNFDSTCIYITTSRCAAAEAGDFSRTGVTELTN*

>peptide 5 (35 aa)
MSPMRSPPSAPPRSPAPRPIPMPPAFLGGFTACCW*

>peptide 6 (85 aa)
MAFQRAGSRLVRGMRWMGRLFSRLVGSRRVAGRRPPWLMVGRRIVEEGKRRPWLWVGTRMEAGTRAEAGRRPEEQRRTPRLAGPG*

Sequence

>CNT30135479
GGCAAAAATATACCCTGTTAAACTTTGATAGTACTTGTATTTACATTACCACATCACGCTGCGCAGCGGCCGAGGCTGGCGATTTTAGCAGAACAGGAGT
TACAGAACTGACAAACTGAACTGAAGAAGAAGAAAATCGAAGAACAAAAGAACTCTGGTCGTCGCGCGCCGATGGATGCTGGAACAGCCTAGAAATCGAA
GCCACCGCCGTCGTCGAACCCAGCATCGTATCCCGCATCATAGCTGCCGGCGTCACTGATCATGTCGCCGATGAGGAGCCCGCCGAGCGCGCCTCCGAGG
AGCCCCGCGCCGAGGCCCATCCCCATGCCGCCGGCCTTCTTGGGCGGCTTCACGGCCTGCTGCTGGTAGCCGTACCCGGCCGGCTGCTGCGGCGGGTAGC
CGTAGCCGTACCCGCCCTGCTGCGGCGGGGGCGGGTAGCCGTAGCCGGGCTGCTGCTGCGGGGGTGGGTAGCCGTAGCCGTACTGCGGGGGTGGGGCGCC
GTATGGCGCGCCGGTGCTCGGACCGGCCGCGGCGGCGGGGTAGGCGGTGACTGGCTCGTTGGTTTTGGATGGCTTTCCAGCGGGCGGGTAGCCGGCTGGT
GCGGGGTATGCGGTGGATGGGTCGGTTGTTTTCCCGGCTGGTGGGTAGCCGGCGGGTGGCGGGTAGGCGTCCGCCTTGGCTGATGGTGGGTAGGCGGATT
GTGGAGGAGGGTAAGCGTCGGCCTTGGCTGTGGGTGGGTACGCGGATGGAGGCGGGTACGCGGGCTGAGGCGGGTAGGCGGCCTGAGGAGCAGCGCCGTA
CGCCGCGCCTGGCTGGGCCTGGGTGACCTCACCGAGCTTGTAGGAGAAATTGAGCGCGCCCTGGGGCTTCCCGGACCCGATCTTACGGACCTGGTAGGCG
ACGAACTTGACGGGGACGGGGCCGTCGGGGGCGCCGGAGAGCAGCTCGGAGAGCGGGATGTGGACCTCGCCGACGTCGCGGTCGCCGAGGGCGCGCTCGG
CGCGGAGCAGCACGTGGAGGGAGCCCGCGGCGTTGGCGGGGACGGTGAAGCGGAGCGTGGCGTTCCATGCCGGGTTGCGGCCGCCGAGGCGGTCGGTGGG
CACGCGCTGGCGCGAGCGCGGGTCGCCGGAGAGCGCGACGAGCGCGTAGACCTCCATCTTGGAGAGCAGGTTGACGTCCTTGAGGTCCTTGCCCGAGATC
AGGGTCAGCTCCAGCGTGCGCTGGGCCATGGCGAACGATCGGGTCGAGGATCGGTGGGGAAGAGGAATTCGGCCTTGCGAGATCGGGTGGTTGCGGATTT
GTGAATTGGTGGGAGGGGGACAGATCTGGGTGTTGGAGGAAGAAGAAGACTTGGGATTGTTGGGACGGCAGGGGCGCCTCGTTTTATATACCG