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Detailed information on CNT30134638


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30247924Lolium perenneAvena sativa50.5941.3287.15638forward
CNT30149306Lolium perenneBrachypodium distachyon6.4220.286.4281forward

Expression of CNT30134638

Peptides detected in this lncRNA

>peptide 1 (38 aa)
QKYTLLNFDSTCIYITTSRCAAAEAGDFSRTGVTELTN*

>peptide 2 (35 aa)
MSPMRSPPSAPPRSPAPRPIPMPPAFLGGFTACCW*

>peptide 3 (79 aa)
MAFQRAGSRLVRGMRWMGRLFSRLVGSRRVAGRRPPWLMVGRRIVEEGKRRPWLWVGTRMEAGRRPEEQRRTPRLAGPG*

>peptide 4 (53 aa)
MANDRVEDRWGRGIRPCEIGWLRICELVGGGQIWVLEEEEDLGLLGRQGRLVLY

Sequence

>CNT30134638
GGCAAAAATATACCCTGTTAAACTTTGATAGTACTTGTATTTACATTACCACATCACGCTGCGCAGCGGCCGAGGCTGGCGATTTTAGCAGAACAGGAGT
TACAGAACTGACAAACTGAACTGAAGAAGAAGAAAATCGAAGAACAAAAGAACTCTGGTCGTCGCGCGCCGATGGATGCTGGAACAGCCTAGAAATCGAA
GCCACCGCCGTCGTCGAACCCAGCATCGTATCCCGCATCATAGCTGCCGGCGTCACTGATCATGTCGCCGATGAGGAGCCCGCCGAGCGCGCCTCCGAGG
AGCCCCGCGCCGAGGCCCATCCCCATGCCGCCGGCCTTCTTGGGCGGCTTCACGGCCTGCTGCTGGTAGCCGTACCCGGCCGGCTGCTGCGGCGGGTAGC
CGTAGCCGTACCCGCCCTGCTGCGGCGGGGGCGGGTAGCCGTAGCCGGGCTGCTGCTGCGGGGGTGGGTAGCCGTAGCCGTACTGCGGGGGTGGGGCGCC
GTATGGCGCGCCGGTGCTCGGACCGGCCGCGGCGGCGGGGTAGGCGGTGACTGGCTCGTTGGTTTTGGATGGCTTTCCAGCGGGCGGGTAGCCGGCTGGT
GCGGGGTATGCGGTGGATGGGTCGGTTGTTTTCCCGGCTGGTGGGTAGCCGGCGGGTGGCGGGTAGGCGTCCGCCTTGGCTGATGGTGGGTAGGCGGATT
GTGGAGGAGGGTAAGCGTCGGCCTTGGCTGTGGGTGGGTACGCGGATGGAGGCGGGTAGGCGGCCTGAGGAGCAGCGCCGTACGCCGCGCCTGGCTGGGC
CTGGGTGACCTCACCGAGCTTGTAGGAGAAATTGAGCGCGCCCTGGGGCTTCCCGGACCCGATCTTACGGACCTGGTAGGCGACGAACTTGACGGGGACG
GGGCCGTCGGGGGCGCCGGAGAGCAGCTCGGAGAGCGGGATGTGGACCTCGCCGACGTCGCGGTCGGTGGGCACGCGCTGGCGCGAGCGCGGGTCGCCGG
AGAGCGCGACGAGCGCGTAGACCTCCATCTTGGAGAGCAGGTTGACGTCCTTGAGGTCCTTGCCCGAGATCAGGGTCAGCTCCAGCGTGCGCTGGGCCAT
GGCGAACGATCGGGTCGAGGATCGGTGGGGAAGAGGAATTCGGCCTTGCGAGATCGGGTGGTTGCGGATTTGTGAATTGGTGGGAGGGGGACAGATCTGG
GTGTTGGAGGAAGAAGAAGACTTGGGATTGTTGGGACGGCAGGGGCGCCTCGTTTTATATA