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Detailed information on CNT30134375


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LNJ3|APF2_ARATH, E-value = 3e-85

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3099697Lolium perenneOryza rufipogon25.7539.8990.07282forward

Expression of CNT30134375

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MTDKAAHSSANPARSVVTHVLLPVIINQQPLGTKATRWPSPSKTTRKPCCWMLPMMETPPSVPAKAKQKVPLESTGMR*

Sequence

>CNT30134375
CAGCGTAAAAAGGTGTAATGCGTGAGAAACAGCGAATGAGATTGTCTGTTTTTTAACCATCACTTTTACAGTCTTGAACAAACAAACCGTCTTATCCTCG
TTTCCTCTGAAAGCACGCCCGACAGCTCTGCGCACCGCCAGGGCTCTACAGCATCCAAAGCTCACCCTCAGCTAATTAAATTATGACTGACAAAGCCGCA
CATTCATCCGCTAATCCAGCTCGCTCTGTTGTTACACACGTACTGCTACCAGTAATAATCAATCAACAGCCCTTGGGCACGAAGGCAACGCGCTGGCCGT
CGCCGTCGAAGACGACCCGGAAGCCCTGCTGCTGGATGTTGCCGATGATGGAGACGCCGCCGTCCGTGCCGGCGAAGGCGAAGCAGAAGGTGCCCTTGGA
GTCCACCGGGATGAGGTAGTTCTCCGGTGGCAGCGACGCCTCCGCGCCCCCCGCGAAGTGCATGGACACGGTGGGCACCTTGACCACCTTGCGGCCGCTG
AGGTCGTAGCAGGTGTCGAAGAGCGAGAAGCCGCCGGGGGAGAGGCGGAGGTCGGAGTTGGCGACGCCGGGTACGCGCGCGCCGCCCACGCTGATGCCGG
CGAGCTGCACGTAGTAGAAGGTCTCCATCCGCGGGTTCTTGACCATCGGGGTGAATGACGAGGCGACGGTGGAGGCGAGCGCGGCGGAGCCGAAGGTGAC
GGTGGAGGACCGGGAGGAGGCCGGGGTGGCCGAGGAGGTGCGGTCCACGAGGCAGTAGGAGAAGCTGCGGCCGTAGCGGCGTGAGATCTGGGCCGGGAAG
GAGAGGCTGCCGCGGCCGAGCCCCAGGAGCCCCGCCGCCGCCACGAAGAGTCCCTCGTTGTCGTGGCCGCACCCCACGGCGACGCGCGCGACGCGGGCGC
CGCCGGCGAAGGTGAGCGTCTCGGTGGCGAAGTCCCCCGCGGTGACGGAGCCCGCGCCGTAGGACTTGGAGCGGCGCGGTTCGAACACGGGGCCGGACTG
GTCGTAGCAGCGCCTGCACGGCGCGCACTGCAGCCACACCACGTCGCTGCCGGTGTCGAGCACCATGAGCGCGGGCGTCGCGGGCGTGCCCACCC