Detailed information on CNT3013315


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30453230Zea maysSaccharum spontaneum22.495.7597.3776forward
CNT30362823Zea maysSorghum bicolor22.7814.8494.8177forward

Expression of CNT3013315

Peptides detected in this lncRNA

>peptide 1 (60 aa)
PASRRLWFSPPPENQTLNNPRSTTDSPVTRTKRIGRTGISTNDPTSARAGCLKSHLRDGR*

>peptide 2 (30 aa)
MGASQPASQQGATINWRGGSPSRSRTTGTW*

Sequence

>CNT3013315
GCCGGCTTCCCGTCGGTTGTGGTTCTCTCCTCCTCCGGAGAACCAAACCCTAAATAACCCGAGATCTACAACTGACTCACCAGTGACAAGGACCAAACGA
ATCGGACGGACGGGGATTAGCACTAATGATCCAACTAGTGCCCGCGCAGGATGTCTAAAATCCCATCTGCGCGACGGCCGTTAACCTTCTTTAACCCTCC
TCCTGCTGCACGACGGCAGTGTGGGTAGGATGGGAGCCAGCCAGCCAGCCAGCCAACAAGGGGCGACGATTAATTGGCGAGGAGGGAGTCCCAGTCGATC
TCGTACGACGGGTACTTGGTGAGCGCGAAGCCGGCGGC