CANTATAdb - search

Detailed information on CNT30132303

BLAST search results

BLAST vs Swiss-Prot:
sp|O65857|GSTF1_ORYSJ, E-value = 4e-87

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30440763	Lolium perenne	Aegilops tauschii	15.04	29.01	90.48	105	forward

Expression of CNT30132303

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MAASFRLPSLSRSTSSVLYLRRTYFEIARDSGII

>peptide 2 (49 aa)
CNTKFSFRTCNRQTESITKYDFSLKEFHGIHNHQTARWCNSRDTSLLPE*

>peptide 3 (45 aa)
MHTHLITRERSALHSDQALGGTMLALIFLMAGLAMILSHHALTCG*

Sequence

>CNT30132303
CTGTAATACAAAATTCTCATTTAGGACTTGCAATCGACAAACTGAGAGCATCACAAAATATGATTTCAGTTTAAAAGAGTTCCACGGAATACACAACCAC
CAAACTGCACGCTGGTGCAATTCTAGAGATACAAGCTTATTGCCTGAGTAGTGATACCAGGAAAAAGGAACATCACATATGCATACACATCTCATAACGC
GAGAACGATCTGCCCTGCATTCAGATCAAGCCTTGGGTGGAACCATGCTTGCGCTGATCTTCTTGATGGCCGGCCTGGCCATGATCCTCTCCCACCACGC
CTTGACGTGCGGGTAGGAGTCGAATAGCGCCGCGTGTGGTGTCGCCATGAAGTAGAAGGTGTAGGGGAAGTGGTTGAGGTCGGCGAAGCTCACGAAATCA
CCGGCCAGGTACTCGTGCTTGGACAGGCGCGCCTCATACACCTCCAGCACCTTCTTGAGCTTCTCGAGGCTCTCGGCCACGACCTTCTCATCGGTGGGGA
TGCCGCGCATCATGGGGTTGAAGAGGCATTGGTACACGATGGGGGACAGTGCCGGGTTGTAGGTGTGCGCGTCCACCTCCGTCCACACGTCCACCATGGC
CGCCTCCTTCAGGTTGCCCTCCCTCAGCAGGTCGACCTCGTCCGTCTTGTACTTGCGGAGGACATACTTTGAGATCGCGCGTGACTCTGGGATCATAA