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Detailed information on CNT30132288


BLAST search results

BLAST vs Swiss-Prot:
sp|O80337|EF100_ARATH, E-value = 9e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30101508Lolium perenneOryza rufipogon1142.1590110forward

Expression of CNT30132288

Peptides detected in this lncRNA

>peptide 1 (38 aa)
APSLWCFALAGRPIPLPSISHLRNCARQRPLSRPCTCR*

>peptide 2 (46 aa)
RRRCGALPWLAVPFRCHRSRTCETVQGSGRCHGHALAAESVPHCLS*

>peptide 3 (47 aa)
AVAVVLCLGWPSHSVAIDLALAKLCKAAAAVTAMHLPLNPFHIVCPS*

>peptide 4 (66 aa)
MAMDAAAASPRFLLFGEGPDEEVVGSGDGRLSPAAEAPAAAAAWAAAISEPMRSGKLRSAREPRMR*

Sequence

>CNT30132288
GCGCCGTCGCTGTGGTGCTTTGCCTTGGCTGGCCGTCCCATTCCGTTGCCATCGATCTCGCACTTGCGAAACTGTGCAAGGCAGCGGCCGCTGTCACGGC
CATGCACTTGCCGCTGAATCCGTTCCACATTGTCTGTCCTAGCTGACGAGCTGCTGCACGCGCACCTGCTCGACGGGCGCGGCGGGGAACCAGGTCTGCG
CCGGGCGTGTGAGCTGGGAGGGCGGCGGCACCAGGGCCATGGCCATGGACGCGGCCGCCGCCTCGCCTCGTTTTCTTCTCTTCGGGGAGGGCCCGGACGA
GGAGGTGGTTGGTTCGGGCGACGGGCGCTTGTCGCCGGCGGCAGAGGCACCGGCGGCGGCTGCGGCGTGGGCGGCGGCGATCTCGGAGCCGATGCGGAGC
GGGAAGTTGAGGAGCGCGCGGGAGCCGCGCATGCGGTAGGCGGCGCGGTCGTAGGCGACGGCGGCGTCCTCGGCGGTGTCGTAGGTGCCGAGCCAGACGC
GCGCGCCGTTCCTGGCCGGGTCCCGGATCTCCGCGGCGAACTTGCCCCAGGGCCGCTGGCGCACCCCGCGGTAGTGCTTGCCCCTGGCCACCGCCGCGGC
CTGCTCCTCGCGCCTGGGCGTGTGCTCCTCGGTGGGCGTGGTGGGGTAGCAGTCGAGCAGCTCCGGCTCGAGGGAGGAGGCGCAGGCGTCGTCGACGTAG
GAGCAGGAGGAGGAGGAGTCCGGGGAGGACGGCAGCGGCTCGGGCTTGACGGCGTCGCGGAGCGCGCCGTAGACGACCATGTCGTCGGCGTCGTCGGCGC
GGAACGGGAGCGACTCGCTCCACTGGTCCGCCACCAGGCTCCCGAAGCTGGCGCTGCGGCAGTAGGCCGGCCTCGGCCTCCCCGCCGCCTCGGGCGAGGG
CGATGCGGCCGCCGTGTCGTCCATGAGGTGGTGCCTGATGGTGTCCAGCACCGTCGTCGCCGGGTTCAGCAGCATGGTGGTGCTCCTCTGCTTTGTCGCT