Detailed information on CNT30132178


BLAST search results

BLAST vs Swiss-Prot:
sp|P0DKK9|RS10B_ORYSJ, E-value = 2e-47

BLAST vs NONCODE:
NONCSAT001298, E-value = 6e-17

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676268Lolium perenneSetaria viridis18.4246.394.5200forward
CNT30524047Lolium perenneSetaria italica6.3525.8492.7569forward
CNT30402368Lolium perenneBeta vulgaris9.7625.4882.08106forward
CNT3048190Lolium perennePrunus dulcis8.4744.8884.7892forward
CNT30158916Lolium perennePistacia vera16.333.1581.92177forward
CNT30638417Lolium perenneCapsicum annuum14.5541.6981.01158forward
CNT30568391Lolium perenneActinidia chinensis13.7239.6381.88149forward
CNT30242372Lolium perenneAvena sativa25.3296.8393.45275forward
CNT30661658Lolium perenneTriticum dicoccoides20.946.3391.19227forward
CNT30231797Lolium perenneAnanas comosus11.7958.4589.06128forward
CNT30654812Lolium perenneRosa chinensis16.4842.7286.03179forward
CNT30625907Lolium perenneDaucus carota10.1334.8182.73110forward
CNT30680807Lolium perenneTriticum urartu19.1510091.35208forward
CNT30721184Lolium perenneTriticum spelta12.3454.9291.79134forward
CNT30620647Lolium perenneCajanus cajan14.9230.1180.86162forward
CNT30360735Lolium perenneLactuca sativa13.1730.9580.42143forward
CNT30152103Lolium perennePrunus persica17.3182.8281.38188forward
CNT3051679Lolium perenneAmborella trichopoda9.9433.8681.48108forward
CNT30151512Lolium perenneBrachypodium distachyon18.2370.9788.89198forward
CNT30101397Lolium perenneOryza rufipogon9.4847.4786.41103forward
CNT30116593Lolium perenneOryza nivara24.9573.4490.41271forward

Expression of CNT30132178

Peptides detected in this lncRNA

>peptide 1 (41 aa)
NTRTIIPEQRRHGKTKDYCRINLGETFKATFAKTIILSESR*

>peptide 2 (37 aa)
TTHEQSYQNKEDMAKQKITAGSTWGKHLRQRLQKLLY*

>peptide 3 (65 aa)
MSVTKKRIQQDIRSSWYQHSRVHIETSQCMILICMFRYSCLSIAMLNHMTKKRHRHFKDIVDYPE*

>peptide 4 (48 aa)
MRRETSHPNLGKFTPLRKRSDHRHSRHHGQSHLHHHHGQTHHQSSEKI*

>peptide 5 (36 aa)
MAFLQLAAGQCPHFTKKSVQIKKYMNVTVEREKKIA*

>peptide 6 (33 aa)
MMAGTLLELHLSHQQSHQVGQRQMGGQEAWQTS*

Sequence

>CNT30132178
ACAACACACGAACAATCATACCAGAACAAAGAAGACATGGCAAAACAAAAGATTACTGCAGGATCAACTTGGGGGAAACATTTAAGGCAACGTTTGCAAA
AACTATTATACTGAGTGAATCAAGGTAGCACATTTTAGCATGTGTAGACAACACTGATCAATCTTGCAAACATCACTACTACATAATATAACCATCATGC
AAAATTAACGCATCATGAGAAGGGAAACATCACATCCGAACTTGGGGAAGTTCACTCCATTGAGGAAGAGGTCGGACCACCGCCATAGCCGCCACCACGG
CCAAAGCCACCTGCACCACCACCACGGCCAAACCCACCACCAGAGCTCTGAAAAAATTTAGGGTGGAAAAATTGGTGAGCATCCAATTCAGATCAGAAAT
TAGCTGTTCCTTTAATACAGTATATGGCATTTCTTCAGCTGGCAGCAGGACAATGCCCACATTTCACAAAGAAAAGTGTCCAAATAAAAAAATATATGAA
TGTAACTGTTGAGCGTGAAAAAAAAATAGCCTGACAATCAAAATCTTCCTAGCGTACAGTATTAAACTAATGAGTGTAACGAAGAAGAGGATTCAGCAAG
ATATTCGCAGTTCATGGTATCAACATTCTAGGGTGCACATAGAAACCAGCCAGTGCATGATTCTGATTTGCATGTTTAGGTATTCCTGTTTGTCAATTGC
AATGCTAAATCATATGACCAAAAAAAGACATAGGCACTTCAAGGACATAGTAGATTACCCTGAATGATGGCTGGAACTCTGCTGGAGCTCCACCTTTCTC
ACCAGCAAAGTCACCAGGTGGGCCAGCGCCAAATGGGCGGCCAGGAGGCTTGGCAGACTTCTTGAGCGTGTTGGGCACGATCTCAGATGGCAGGTTGAGG
AAGGTGCGCAGGAACTCAATGCCCTCATTGGTGAGGTACCAGTAGTAGTGCTGCCACGAGAAGGTCTCCCTGACGTACTCCTTGGACTTGAAGCTCTGCA
TGAGCTTGATCACCTGGAGGTTGGGCACGTCAATCTGCGGGTGCTTGGCCAGGTTGTAGTCCTTCTTGGCGTAGAGCACACCCTCT