Detailed information on CNT30132048


BLAST search results

BLAST vs Swiss-Prot:
sp|P27523|CB23_HORVU, E-value = 6e-141

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30656512Lolium perenneTriticum dicoccoides20.9236.4393.88196forward
CNT30450697Lolium perenneSaccharum spontaneum60.9471.1189.49571forward
CNT3013167Lolium perenneZea mays60.5173.3585.89567forward
CNT30370632Lolium perenneOryza glumipatula36.1844.0388.5339forward
CNT30148272Lolium perenneBrachypodium distachyon43.0142.5688.34403forward
CNT30556505Lolium perennePanicum hallii53.2671.3989.38499forward

Expression of CNT30132048

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MDEVGVPEVVEAAVGEDLRAGLEPDGLLELDAHPLLEHLGEDAAERAEHGPPAVDDLERPVPGEGLRVGG*

>peptide 2 (63 aa)
MACTKNPNMENMARRPFLISLTLSSAKVTGPLMRNPSTRPMSRTWKPSTARMLCAWTRLGFPR*

>peptide 3 (45 aa)
GEDGFCTCYARQFKCSCMVVCILLNFTSSSSHQLLHVSILDTMHA*

>peptide 4 (34 aa)
MRDRTKKSLRFLNSENNSRDHCLQFACMTLDKQE*

>peptide 5 (29 aa)
MAHRPWMTSSALFLAKASGSADSPAVSQP*

Sequence

>CNT30132048
GGTGAAGATGGATTTTGCACCTGCTATGCTCGCCAGTTCAAATGCTCATGCATGGTAGTATGCATTTTGCTGAATTTCACATCCAGTTCTTCTCATCAGT
TATTACACGTCTCCATACTTGATACAATGCACGCATAGCCAACAAGAATCAGCTAAGCACACCATATAGTAAGTTGACAGACATGAGAGATCGAACCAAA
AAATCCTTGAGATTTCTGAATTCTGAGAACAATTCAAGAGACCATTGTTTGCAATTTGCGTGCATGACACTCGACAAACAAGAGTAGTTTACACTTTACA
AGCGGCGGGGCGCCGTGCTGCGTCGACCGGTCCACGACTTAAGAGCCAGGAGCGAACTTGGTGGCGAAAACCCAGGCATTGTTGGCGACAGGGTCGTCGA
GGTGGTCGAAGAGGTTCTCCAACGGGCCCTTGCCGGTGACGATGGCTTGCACGAAAAACCCAAACATGGAGAACATGGCGAGGCGTCCATTCTTGATCTC
CTTGACCTTAAGCTCTGCGAAGGTGACGGGGCCGTTGATGCGGAATCCCTCGACGAGGCCCATGAGCAGGACCTGGAAGCCGAGCACGGCGAGGATGCTC
TGCGCATGGACGAGGTTGGGGTTCCCGAGGTAGTCGAGGCCGCCGTCGGAGAAGATCTGCGAGCCGGCCTTGAACCAGACGGGCTCCTTGAACTCGACGC
CCACCCACTTCTGGAGCACCTCGGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCACCGGCCGTGGATGACCTCGAGCGCCCTGTTCCTGGCGAAGGC
CTCCGGGTCGGCGGATAGCCCGGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGTTGAGGTACGACGGCGTCTGCGCGGAGAAAGGGCCCAGGTAC
TTGACGCGATCCGGGCCGTACCACAAGTCGTTGCCCT