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Detailed information on CNT30131432


BLAST search results

BLAST vs Swiss-Prot:
sp|O22588|TIP32_ARATH, E-value = 3e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30291823Lolium perenneTriticum aestivum25.6269.2683.41205forward

Expression of CNT30131432

Peptides detected in this lncRNA

>peptide 1 (43 aa)
ASHRLRVRFMRVAFTNSLHQDIVHNILHFPNNLFTRPALIKAF*

>peptide 2 (37 aa)
MDAPEKLPPARVFAPTMRPVSIGPYPGTVVRGSRMVA*

>peptide 3 (38 aa)
MVESNSTRPLACSSSWEGKIRDAVRACGSGKKSAGMSDE

Sequence

>CNT30131432
GCGAGCCACCGCCTAAGAGTTCGTTTCATGCGTGTGGCGTTTACCAATAGCTTGCATCAAGATATAGTCCATAACATTTTACATTTTCCAAACAATCTAT
TTACACGGCCAGCCCTAATCAAAGCTTTTTGAGAAACAACCTTCAATTGCAGTCCCTAGGAACCATTTCTACATCCGCCTAGAATCACTCCGCGGGAGCA
ATTTAACAGCAACATCGATTCCCTAATACGCACATCTATGTATGTATACATGACAGACAAAATGTGACGCAAATATGCAGGTCAGCCTGCTGATCTAGAA
GTCCCATCCGAGCAGAGGCTCGTGCGTCTTCTTGACCATGAACACCGACTCGTAGACGAAACCGGCAAGCGGCCCACCGACGAGCGGGCCGACCCAGTAG
ATCCAGTGGTTTGTCCACACTCCGGTGGCCAACGCGGGCCCGAAGGACCGAGCGGGGTTCATGGACGCGCCGGAGAAGTTGCCGCCGGCGAGGGTGTTTG
CGCCGACGATGAGGCCGGTGAGCATCGGCCCGTACCCCGGCACGGTGGTCCGCGGGTCGAGGATGGTCGCGTAGACGACGAAGAGGAGGGAGAAGGTGAG
TACCAGCTCCCCCAGCACGGCGCGGACGCAGCCGGCGTCGACGACCTCGTGCTCGTCGAACGAGTCCACGTGCTTGGTGGCCATGGTGGAATCGAACTCC
ACAAGACCTCTTGCTTGTTCCTCTTCTTGGGAGGGAAAGATCAGGGACGCGGTGAGAGCTTGTGGCTCCGGGAAAAAAAGCGCAGGAATGAGTGATGAGT