Detailed information on CNT30130870


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30543704Lolium perenneBrassica napus24.4518.1894.6456forward
CNT30236753Lolium perenneBrassica oleracea24.4518.2494.6456forward
CNT30262508Lolium perenneBrassica rapa24.4518.1894.6456forward
CNT30361461Lolium perenneSorghum bicolor36.2426.9591.5783forward
CNT30596008Lolium perenneOryza meridionalis31.8823.6293.1573forward
CNT30369785Lolium perenneOryza glumipatula31.8818.7291.7873reverse complement
CNT30603809Lolium perenneOryza punctata31.8823.7893.1573forward
CNT30550736Lolium perenneOryza brachyantha3123.0592.9671forward

Expression of CNT30130870

Peptides detected in this lncRNA

>peptide 1 (43 aa)
RLDASCGACAWAWVALRGQPVPSCVVCSWCSGESLALGVAETA*

>peptide 2 (70 aa)
AFGCLVWRLCLGLGCTSWTARSKLRSVLVVLRRKPGTWSGGNGVRLVSQSSVTARFQRWKDNWPLRPRPN*

Sequence

>CNT30130870
GGCGTTTGGATGCCTCGTGTGGCGCTTGTGCCTGGGCCTGGGTTGCACTTCGTGGACAGCCCGTTCCAAGTTGCGTAGTGTGCTCGTGGTGCTCCGGCGA
AAGCCTGGCACTTGGAGTGGCGGAAACGGCGTGAGGCTGGTTTCACAGAGCAGCGTTACCGCCCGCTTCCAACGGTGGAAGGATAACTGGCCGCTGCGAC
CCAGGCCCAATTAGGTCCATGTGCCCTCT