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Detailed information on CNT30130711


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ZBP3|H2B2_ORYSJ, E-value = 8e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693619Lolium perenneOryza sativa30.2932.5497.57206forward
CNT30671720Lolium perenneSetaria viridis26.4740.0997.78180forward
CNT30523142Lolium perenneSetaria italica36.1847.3196.34246forward
CNT30315505Lolium perenneCorylus avellana26.1838.9587.64178forward
CNT30518328Lolium perenneJuglans regia39.7152.1283.7270forward
CNT30702570Lolium perenneQuercus lobata18.9725.887.6129forward
CNT30618877Lolium perenneSesamum indicum38.8233.5582.58264forward
CNT30630598Lolium perenneVigna unguiculata39.1247.7681.95266forward
CNT30181099Lolium perenneSecale cereale41.9135.2794.74285forward
CNT30284074Lolium perenneTriticum aestivum41.9147.7497.89285forward
CNT30220727Lolium perenneHordeum vulgare41.9136.5495.44285forward
CNT30395424Lolium perenneTriticum turgidum42.3559.8896.18288forward
CNT30565715Lolium perenneActinidia chinensis40.2934.985.04274forward
CNT30586986Lolium perenneMusa acuminata37.6572.3288.67256forward
CNT3086649Lolium perenneVigna radiata39.1235.6682.33266forward
CNT30552027Lolium perenneOryza glaberrima41.9152.8896.84285forward
CNT30171046Lolium perenneTrifolium pratense40.1576.979.85273forward
CNT30443203Lolium perenneAegilops tauschii41.9143.4595.44285forward
CNT30241394Lolium perenneAvena sativa42.2154.6796.86287forward
CNT30660053Lolium perenneTriticum dicoccoides41.9142.9995.79285forward
CNT30597299Lolium perenneFraxinus excelsior28.6835.5281.54195forward
CNT30457287Lolium perenneSaccharum spontaneum40.1532.7398.17273forward
CNT30606042Lolium perenneGossypium raimondii18.0940.3384.55123forward
CNT3066775Lolium perenneLeersia perrieri20.2935.9495.65138forward
CNT30129800Lolium perenneCorymbia citriodora40.2934.0488.32274forward
CNT30684130Lolium perenneTriticum urartu40.5938.0797.46276forward
CNT30722585Lolium perenneTriticum spelta40.2937.3897.08274forward
CNT30346527Lolium perenneEragrostis tef26.0383.8997.74177forward
CNT30363575Lolium perenneSorghum bicolor40.1529.6197.8273forward
CNT30596761Lolium perenneOryza meridionalis30.2926.0894.66206forward
CNT30359864Lolium perenneLactuca sativa17.9429.4784.43122forward
CNT30369169Lolium perenneOryza glumipatula40.1547.6495.97273forward
CNT30570929Lolium perenneVitis vinifera38.3838.980.46261forward
CNT3052765Lolium perenneAmborella trichopoda18.9725.3987.6129forward
CNT30327286Lolium perenneAsparagus officinalis40.2930.3190.88274forward
CNT30103076Lolium perenneOryza rufipogon26.1829.5294.94178forward
CNT30577496Lolium perenneOryza barthii29.7137.8395.05202forward
CNT30496069Lolium perenneDigitaria exilis41.6235.4695.05283forward
CNT30557628Lolium perennePanicum hallii2530.5297.06170forward
CNT3065708Lolium perenneSelaginella moellendorffii18.0935.4585.37123forward
CNT30114697Lolium perenneEutrema salsugineum18.9721.0483.72129forward

Expression of CNT30130711

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSLMKEFMMDMALEEMPMSGWTCLSTLKM*

Sequence

>CNT30130711
GCATAACAGAGATCACTCAGACATAGCAGCATAGGAGTGAATTAATCAGGATCCAAGGTTTCACGAAAGAACACCACATCATTACTATTTCACTTCTCAT
AACCACATGACAATACCAACAACGACCACCAGCTTCCATTCAGCAATAAGACTACTACTAGATAAACAGATGTAACTACCACCAGACACTGCAGTTGCTA
AGGACTGCAAAGAAAGCAGATCTAAGATGAGGTGAACTTGGTGACAGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGG
CGGACGGAGGTCTGGATCTCCCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCGAGCTTGGCGGCCTCGCCGGCGAGTTTCTCGAAGATGTCGTTGA
TGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGGGTGGACCTGCTTGAGCACCTTGAAGATGTAGATCTTGTAGGTCTCGACGCT
CTTCCCGGCCTTGGGCTTCTTCGTGGCAGGGGCCTTCGCGGCCGGCTCCGCCGCCGGCTCCTCCTCGACGGGCTTCTTGGCCGCCGGCTTCTTCTCCGCC
TTGGGGGCCATCGCTGCTGCTGGAGGTTGGTAGGTGGTGGTTCGATGGAGGGCTGGGAGTGGTGGCGGCGGCGGCGGCGG