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Detailed information on CNT30130161


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LW49|ERF4_NICSY, E-value = 6e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693427Lolium perenneOryza sativa13.122.4990.91110forward
CNT30585986Lolium perenneMusa acuminata18.4522.8383.23155forward
CNT30437038Lolium perenneAegilops tauschii18.4520.1887.74155forward
CNT30474096Lolium perenneSaccharum spontaneum18.6941.2194.27157forward
CNT30572283Lolium perenneVitis vinifera12.7422.6786.92107forward

Expression of CNT30130161

Peptides detected in this lncRNA

>peptide 1 (85 aa)
YESFLQAVQVVITQYNSVHNNAGRTCLALGGSTSRVFFHLKLTTVLPSGEKKETVFTDLPLSSVTREGRTPKHTREKKKTDERNY*

>peptide 2 (68 aa)
MIISAKKLRRPNDQRSSAGGGQFRSRSKSTGALCADAAACCCRTCGTQRRRPPRPGRRSRTGGTRGSR*

>peptide 3 (58 aa)
MACMGACTSPPNDSTVLLLLLRLPSPPAPTGTAVASADGNSGKLVLALEPRYSRAAAS*

Sequence

>CNT30130161
TACGAGTCTTTTCTCCAGGCTGTCCAAGTAGTAATAACTCAATATAATTCGGTCCATAACAACGCCGGCAGGACTTGCCTTGCCTTGGGCGGCAGTACAT
CTCGGGTCTTCTTCCATCTCAAGCTAACCACTGTACTCCCCTCCGGCGAAAAAAAGGAAACCGTATTTACAGATCTACCCCTCTCCTCCGTTACGCGAGA
GGGCCGGACGCCTAAACATACAAGAGAGAAAAAAAAAACCGACGAACGAAACTACTAGCGAGTCATGATCATATCAGCTAAAAAACTCCGGCGCCCAAAC
GATCAGAGGAGCTCCGCCGGCGGCGGGCAGTTCAGGTCCAGGTCAAAATCGACGGGCGCCCTCTGCGCCGACGCGGCGGCATGCTGCTGCCGTACATGTG
GCACCCAGCGGCGGCGGCCGCCGCGGCCTGGCCGAAGAAGTAGAACGGGTGGGACACGGGGTAGCCGCTGAACGGGAACCTCACGCCGGCGCCTGCACCG
CCCGCGGCGTTGGCGGCGCGGTGGAAGAGGTCGAGCTCCAGCGACGCGGGAGGGAGCGGCATGGCCTGCATGGGCGCCTGCACGTCGCCGCCGAACGACT
CCACGGTGCTGCTGTTGCTGCTCCGGCTGCCGTCTCCGCCGGCGCCGACGGGCACGGCCGTGGCCAGCGCGGACGGGAACAGCGGGAAGTTGGTCTTGGC
CTTGGAGCCGCGGTACTCGCGCGCGGCGGCGTCGTAGGCGCGGGCCGCCTCCTCGGCCGTGTCGTACGTGCCCAGCCACACGCGGCTCTTTTTCGCCGGG
TCGCGGATCTCCGCCGCGTACCGGCCCCACGGACGCTTCC