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Detailed information on CNT30129950


BLAST search results

BLAST vs Swiss-Prot:
sp|P46819|RPOC1_SINAL, E-value = 2e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30699116Corymbia citriodoraQuercus lobata41.9411.1190.38208forward
CNT3019361Corymbia citriodoraCitrullus lanatus15.5225.2593.5177forward
CNT30632296Corymbia citriodoraVigna unguiculata45.562788.05226forward
CNT30202316Corymbia citriodoraPisum sativum43.3543.2691.63215forward
CNT30314046Corymbia citriodoraCamelina sativa45.365.8791.56225forward
CNT3082978Corymbia citriodoraBrassica juncea48.592.9792.12241forward
CNT30154455Corymbia citriodoraPrunus persica51.8134.2783.27257forward
CNT3057109Corymbia citriodoraAmborella trichopoda47.5810.5288.56236forward
CNT3039151Corymbia citriodoraCucumis melo45.5626.4392.04226forward
CNT30100313Corymbia citriodoraOryza rufipogon27.2259.2191.11135forward

Expression of CNT30129950

Peptides detected in this lncRNA

>peptide 1 (38 aa)
KNRKQSRSRNGRGGKEKEKREKEEKLSRAHHGPLHSSS*

>peptide 2 (51 aa)
EEQKTEQKQKRERREREGKEGEGGETLTCSPWTPPQLILTPFHGASLSVSN*

>peptide 3 (49 aa)
GRTENRAEAETGEEGKRRKRGRRRRNSHVLTMDPSTAHLNSFPWCQSLS*

Sequence

>CNT30129950
GGAAGAACAGAAAACAGAGCAGAAGCAGAAACGGGAGAGGAGGGAAAGAGAAGGAAAAGAGGGAGAAGGAGGAGAAACTCTCACGTGCTCACCATGGACC
CCTCCACAGCTCATCTTAACTCCTTTCCATGGTGCCAGTCTCTCAGTTAGCAATTGATAGAGTGAAAGCAATAGCGCGGGAACTCTTGGGAGCTGGAATT
TTGGGGTAGTCTAAGGCTGCGTTCTTTCTCATTTCGAATCTGTAAAATCAGAAGTTCGATCAAATCACACATCGCAGTATACTAGCCCTTCTAATTCTTT
AAGAGGTTTATCTAAAATATTCGCGATATAACTAGGAAGACGTTTCAAATACCGCACATGGGTTACTGAACATGCTAATTTGATGTATCCCATTTGATAT
CTTCGTATCCGAGAATCAACAAATTCGACTCCGCATTGTTCACAAAATTTCGGGTCCTCTTTTTCATTTCCGATTACTCGATAATTTCCACAAGCA