Detailed information on CNT3012962


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695840Zea maysOryza sativa25.3523.9889.7165forward
CNT30675663Zea maysSetaria viridis33.6447.184.47219forward
CNT30523385Zea maysSetaria italica21.0417.9885.4137forward
CNT30379122Zea maysManihot esculenta21.231.5180.43138forward
CNT30224390Zea maysHordeum vulgare26.1130.9183.53170forward
CNT30554909Zea maysOryza glaberrima19.232.4790.4125forward
CNT30250601Zea maysAvena sativa13.2120.2486.0586forward
CNT30665102Zea maysTriticum dicoccoides19.3530.4387.3126forward
CNT30721901Zea maysTriticum spelta26.1133.3384.12170forward
CNT30362691Zea maysSorghum bicolor39.4825.9990.66257forward
CNT30371090Zea maysOryza glumipatula14.920.1288.6697forward
CNT30584451Zea maysEchinochloa crusgalli33.6440.8684.93219forward
CNT30594767Zea maysEragrostis curvula9.3723.6491.861forward

Expression of CNT3012962

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MDPGAKGVGVIQAEAGGQESCLEQQHHKILD*

>peptide 2 (41 aa)
MKPNTGTQAKRLVGLQITRTNCKTEYHIATANSLPGRQENR*

>peptide 3 (88 aa)
MLRPSFSMRWIRVPKVLGSSRLKPEVRRAVSNSNITRSLTDLSDLVMPMPLSMMESVFEALSGTMWMNSSGCASSLLLSVRLSNLILSN

Sequence

>CNT3012962
TAGACTTGAATTTTTTGTGTAGTTGTTTATTCTTTAGACTATTAAATACTCAAATTGACATTCAAACATTACGATGATGTGACACGGACTAATGAAACCA
AACACCGGAACTCAGGCAAAACGACTAGTAGGATTACAGATAACAAGAACAAACTGTAAAACAGAGTACCATATAGCTACAGCAAACTCATTGCCTGGCC
GGCAGGAGAACCGTTAACGTGCGGAAAACCTCAAACAGTAGTCAAGATTTAGCTTATCATATGTAATTAGGGATAAACGACAGTGATCCGAAGCTTAGTC
GACCTCCTCCATCTTGCTTTCGCCGGCGTCATCCTCCAGCGGAGGCATCTCAGCTTCGGCCTCAGCAGACTTGTCCTCATCGATGCTCAGACCGAGCTTT
AGCATGCGATGGATCCGGGTGCCAAAGGTGTTGGGGTCATCCAGGCTGAAGCCGGAGGTCAGGAGAGCTGTCTCGAACAGCAACATCACAAGATCCTTGA
CTGACTTGTCGGACTTGGTCATGCCGATGCCGCTGTCGATGATGGAGAGCGTGTTCGAAGCCTTGTCTGGTACAATGTGGATGAACAGCTCCGGCTGCGC
ATCGAGCTTGCTCTTGTCAGTGAGGCTCTCGAACCTGATTTTGTCCAACGC