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Detailed information on CNT30129110


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42699|METE_CATRO, E-value = 2e-66

BLAST vs NONCODE:
NONBRAT005682, E-value = 1e-24

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533996Corymbia citriodoraEucalyptus grandis61.0897.1394.94237forward
CNT30377828Corymbia citriodoraArabidopsis thaliana19.0721.4585.1474forward
CNT30711924Corymbia citriodoraGlycine max83.2558.8382.35323forward
CNT30312764Corymbia citriodoraCamelina sativa57.9959.6883.11225forward
CNT30264951Corymbia citriodoraBrassica rapa57.2266.0782.43222forward
CNT30282Corymbia citriodoraZea mays17.7822.791.369forward
CNT3027096Corymbia citriodoraPopulus trichocarpa54.3860.6383.89211forward
CNT3049510Corymbia citriodoraCucumis sativus47.4245.5484.24184forward

Expression of CNT30129110

Peptides detected in this lncRNA

>peptide 1 (38 aa)
RCSRDHGGLRVIQKDHWPRCSSHQQLQQIDTCPWGTRP*

>peptide 2 (29 aa)
MPQQEHQQNRFGREHSRQKDMIQVPSMLQ*

>peptide 3 (64 aa)
TMLSRPWRVTSDPERSLAQMFLPSTTPANRYLPVGNPPLIKSRVLVPRTKSNPNPVTPFKEVRT*

Sequence

>CNT30129110
ACGATGCTCTCGAGACCATGGAGGGTTACGAGTGATCCAGAAAGATCATTGGCCCAGATGTTCCTCCCATCAACAACTCCAGCAAATAGATACTTGCCCG
TGGGGAACCCGCCCTTGATTAAATCAAGGGTCTTGGTTCCACGGACCAAATCAAATCCAAATCCAGTGACACCCTTCAAGGAGGTAAGAACTTGATATGC
CTCAGCAGGAACATCAGCAAAATAGGTTTGGACGAGAACATTCACGCCAGAAAGACATGATTCAAGTTCCGAGTATGCTTCAGTGAAAGCTTGCAGTTTG
TCAGAATCAAGATCCAACACAAGGGTGGGCTCATCAAACTGAATCCATGAAGCGCCAGCTGCCTTAAGTTCGGACACGACATCCCTGA