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Detailed information on CNT30129085


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39654|PSAL_CUCSA, E-value = 6e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673169Corymbia citriodoraSetaria viridis16.946.4883.71178forward
CNT30639966Corymbia citriodoraNymphaea colorata23.2716.3280.82245forward
CNT30533956Corymbia citriodoraEucalyptus grandis43.0264.993.82453forward
CNT30376197Corymbia citriodoraArabidopsis thaliana7.8820.1984.3483forward
CNT3021623Corymbia citriodoraCitrullus lanatus29.5322.979.42311forward
CNT30730016Corymbia citriodoraCorchorus capsularis31.1549.5580.49328forward
CNT30629841Corymbia citriodoraVigna unguiculata16.2429.2384.21171forward
CNT30507460Corymbia citriodoraNicotiana attenuata18.7165.0281.73197forward
CNT30710011Corymbia citriodoraGlycine max18.946.0681.91199forward
CNT3042792Corymbia citriodoraPrunus dulcis10.3529.5484.4109forward
CNT3094368Corymbia citriodoraSolanum tuberosum21.7588.4282.97229forward
CNT30182270Corymbia citriodoraSecale cereale14.7228.0884.52155forward
CNT30292923Corymbia citriodoraTriticum aestivum14.7267.9884.52155forward
CNT30222283Corymbia citriodoraHordeum vulgare12.3530.9584.62130forward
CNT30564216Corymbia citriodoraActinidia chinensis14.8169.9683.33156forward
CNT3084712Corymbia citriodoraVigna radiata13.3949.8283.69141forward
CNT30437582Corymbia citriodoraAegilops tauschii9.8831.5284.62104forward
CNT30249136Corymbia citriodoraAvena sativa15.3832.7385.8162forward
CNT304795Corymbia citriodoraZea mays12.1628.3286.72128forward
CNT30610860Corymbia citriodoraGossypium raimondii7.3126.184.4277forward
CNT30683149Corymbia citriodoraTriticum urartu14.7234.9984.52155forward
CNT30720963Corymbia citriodoraTriticum spelta11.7822.2685.48124forward
CNT30344816Corymbia citriodoraEragrostis tef8.9322.1286.1794forward
CNT30620323Corymbia citriodoraCajanus cajan20.9912.3778.73221forward
CNT30360483Corymbia citriodoraLactuca sativa1536.0783.54158forward
CNT30154501Corymbia citriodoraPrunus persica12.9243.5985.29136forward
CNT30644515Corymbia citriodoraCannabis sativa21.2738.7579.02224forward
CNT3031830Corymbia citriodoraTheobroma cacao11.2132.3383.9118forward
CNT3037832Corymbia citriodoraCucumis melo32.2940.3878.82340forward
CNT30582252Corymbia citriodoraEchinochloa crusgalli16.2425.9584.21171forward
CNT30556884Corymbia citriodoraPanicum hallii16.2423.5583.63171forward
CNT3049017Corymbia citriodoraCucumis sativus32.2934.6678.24340forward

Expression of CNT30129085

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MKNYGRQNKSRCRNPFMVTFTLRLAQSVQI*

>peptide 2 (37 aa)
MRRSHTLSSRCSGSQPGLRRPMILLLQHTLCSSMGQP*

>peptide 3 (54 aa)
MLRITTRPPAANDPAAPAYSVFLNGPALTKGPTKRSPWARPTSTPRRSGLTAVL*

>peptide 4 (79 aa)
MYSQMDGSYAIISQLALLATYEKLRQTEQITLQKSIHGDFYTPISSISSNIENIVSCSPMPCELSFYVHRSKRLRRVNR*

Sequence

>CNT30129085
CTTATACAGAGCTAAATGACATGAAATTTCCTCAATCCCATTCCTTCCCAAACGGTTCAAATATACAGACATGACTCTTCAATTTCATCTCTCTCTTCTG
TATGAATTTACTTCACAAAGTAAGGAAGGTTGAGCACATAGAGGAGGAAGTAGCGATGGTGCTGTCGAGGGCTCTCCTTCATTGAATGAGGCGATCCCAT
ACATTGTCAAGCAGATGCTCAGGATCACAACCAGGCCTCCGGCGGCCAATGATCCTGCTGCTCCAGCATACTCTGTGTTCCTCAATGGGCCAGCCTTGAC
GAAGGGGCCCACCAAGAGGAGTCCGTGGGCAAGGCCCACCTCGACGCCTCGGAGGAGTGGGCTCACGGCGGTCCTGTAGGCGGGGAGGTTGGAGAGGTAC
CATGCAATGAGCGGGCTGGATGTGACGGGAGTCTCGAGGCTCCCAATGAAAGGGTCACCATTGAGGGGTTGAACCACTTGGAAGGTTGGCTGCATGCGGA
AGGTAGATGCAGGAATTGAAATCCATCAACTAATGTAACGAGTGAATGAAGGTGCTCATAAAAGATGTACTCACAAATGGATGGATCATATGCTATAATC
TCTCAGTTAGCTCTACTAGCAACCTATGAAAAATTACGGCAGACAGAACAAATCACGCTGCAGAAATCCATTCATGGTGACTTTTACACTCCGATTAGCT
CAATCAGTTCAAATATAGAAAATATAGTTTCTTGCAGCCCTATGCCATGTGAATTATCGTTCTATGTACACAGATCCAAAAGACTAAGAAGGGTGAACCG
ATAATGAGAAACTAGACTGAATAATGGATGAGAGAAACTTCCATTTCTTACCTTCGAGTCTCATTTCTTTCTTCCCTCAAATACTAGCTCAACAAGTCAG
ATGACTAGAGAATAACATAGGGATGTTTAAAAGACTGATTCTTTGATTCTACACTGTACAAGCACTTTAGATTGAATCGTGAGTCATAATATTGTCTTGG
TGAAAAAGAGCGAGGGAAACAAAGCAGGATGGACGCGAGAAGGTCTCACCTTC