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Detailed information on CNT3012850


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3079106Zea maysBrassica juncea4.4520.2292.5954reverse complement
CNT30214058Zea maysHelianthus annuus4.9522.7393.3360forward
CNT30107453Zea maysOryza longistaminata4.9522.6491.6760reverse complement
CNT3035140Zea maysCucumis melo4.9524.3991.6760reverse complement

Expression of CNT3012850

Peptides detected in this lncRNA

>peptide 1 (31 aa)
LWRRGVCYAGTNGRRGTDILAPSSVMYTKLV*

>peptide 2 (93 aa)
AMAPRCVLRWHKRTSWHRHLGAELCYVHKTCLAQLVELKAFNLVVVGSSPMIGMLSYFFFVFDTDFFCCPDFSFMSLICPSRFISYPDFCFCD*

>peptide 3 (41 aa)
GYGAEVCVTLAQTDVVAPTSWRRALLCTQNLSSSVGRAQGF*

Sequence

>CNT3012850
GGCTATGGCGCCGAGGTGTGTGTTACGCTGGCACAAACGGACGTCGTGGCACCGACATCTTGGCGCCGAGCTCTGTTATGTACACAAAACTTGTCTAGCT
CAGTTGGTAGAGCTCAAGGCTTTTAACCTTGTGGTTGTGGGTTCAAGCCCCATGATAGGCATGTTATCATACTTTTTTTTTGTCTTTGACACTGATTTTT
TTTGTTGTCCAGATTTTTCGTTTATGTCGCTGATTTGTCCGTCTAGATTTATTTCTTATCCAGATTTTTGTTTTTGTGACTGATTTGTTTATCCGTCCAT
ATTTTTTTCGTTTATTAAGCTTAAGGAAACGTACTTACATTGGTTAGCGGCCACCGGTTTAGCTATGGTGCATCGTGGTTTTTTTCGTTTATGCCGCTGA
TTTGTCCGTCCAAATTTATTTCTCATCTTGATTTGTTTTTGCTTTTGCGACTGATTTGTTTATTACATTTTGTTTAATAGTACTGAATAATCCATCTGGC
CCTTGGTGCATTGTAAACCCCACATGCTTAAGCTTGATTCCGTCCTCTCGCTAATTACAAGTGATTTTAAACATTAAATAATATACTAAAAACTAAAGTA
CACCATTTAAAATGTTAAAAATATTTATATCATAAACAAATGATTGTGTTAATCTTACATTAGTAGTGATGTACAATGATAAATTTTAATTAATATTAAA
AAGTATAATTTCGAATACATTAGATTATTGGAGTTTTAGAGTCCAAAATATAAATATACTTAATAAACAAAAAGATTATAATTAGAGTCCAAAATATAGA
TATACAAGGTATAAATAAACAGCGACTTGATGATTTTATAAAGTACTTTGTACTTCCATAGGGTGGGTTACTTATGTGCATGGTACTTGCGTCACGCAGT
TTGAATAAACAAAAACAAAAACAAAAAATATCTAGATGAATAAATAAATCGGTCACAAAAACAAAAAAACTAGATGAAAAATAAATCTGGACGGACAAAT
CAGCGACATAAACGAAAAATATAGACAACAAAAAAACAAATTAGTGATAAAAAAATACGTCCACGATGGAGCTTGAACCCACAACCTCAAAGTTAAAAGT
CTTGCACTCTACCGACTAAGCTAAACATACTTTGCTGTTACATATCCGAGCTCGGCGCCATAGATCTTGGCGCCGAGCTCGGTACCACGTTGGCGCCACG
TCGTTGAGGTTGG