Detailed information on CNT30128449


BLAST search results

BLAST vs Swiss-Prot:
sp|P24826|CHS1_SOYBN, E-value = 2e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3088050Corymbia citriodoraVigna radiata25.7420.9282.86105forward

Expression of CNT30128449

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MYRLTVGRRPRSLVGDLGLGLPPLLDGVHRRLLGQLRHLHHQNVMPGIQGRLRERTHARVLFQYVLRHVQVPLLDHGS

>peptide 2 (51 aa)
MAFTAASLASFGTSTTRMSCRASKDASVNELMLGCCFNMSSVMCRYLFLIMD

>peptide 3 (72 aa)
EQGLPHEVVQVGLGGPAEGTDGYLGAHDQDARTLVVLSKILGKAEDEAGAVAAHLVHHVPLDSRAEAEELGG*

>peptide 4 (61 aa)
RTGPAPRGCPGRPRWARGRYRRLSRSTRPGCAHPCCSQQDPWQGGGRGRRRSSPPGTSCTA*

Sequence

>CNT30128449
CCGAACAGGGCCTGCCCCACGAGGTTGTCCAGGTAGGCCTCGGTGGGCCCGCGGAAGGTACAGACGGTTATCTCGGAGCACACGACCAGGATGCGCGCAC
CCTTGTTGTTCTCAGCAAGATCCTTGGCAAGGCGGAGGACGAGGCCGGCGCCGTAGCAGCCCACCTGGTACATCATGTACCGCTTGACAGTCGGGCGGAG
GCCGAGGAGCTTGGTGGGTGATCTTGGACTTGGGCTGCCCCCACTCCTTGATGGCGTTCACCGCCGCCTCCTTGGCCAGCTTCGGCACCTCCACCACCAG
AATGTCATGCCGGGCATCCAAGGACGCCTCCGTGAACGAACTCATGCTCGGGTGCTGTTTCAATATGTCCTCCGTCATGTGCAGGTACCTCTTCTTGATC
ATGGATCC