« Back to Corymbia citriodora search


Detailed information on CNT30128346


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 1e-151

BLAST vs NONCODE:
NONGMAT000502, E-value = 2e-121

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641251Corymbia citriodoraNymphaea colorata70.1836.8686.2652forward
CNT30315749Corymbia citriodoraCorylus avellana73.7442.1885.55685forward
CNT30513431Corymbia citriodoraJuglans regia73.7470.3385.84685forward
CNT30165846Corymbia citriodoraPistacia vera71.3755.6785.22663forward
CNT30568721Corymbia citriodoraActinidia chinensis75.0351.2584.94697forward
CNT30586586Corymbia citriodoraMusa acuminata73.8448.2485.13686forward
CNT30538027Corymbia citriodoraBrassica napus73.5236.0284.92683forward
CNT30238962Corymbia citriodoraBrassica oleracea73.7435.4485.11685forward
CNT3079055Corymbia citriodoraBrassica juncea73.5263.0784.77683forward
CNT30229013Corymbia citriodoraAnanas comosus71.2641.9887.16662forward
CNT30643414Corymbia citriodoraCannabis sativa71.5863.2184.51665forward
CNT3033611Corymbia citriodoraTheobroma cacao72.0158.7984.6669forward
CNT30120599Corymbia citriodoraCitrus clementina71.6966.885.74666forward

Expression of CNT30128346

Peptides detected in this lncRNA

>peptide 1 (41 aa)
YFKVHSFTVHIKVHQNKLIILEKWTLSSTMTSDEIIRLKTP*

>peptide 2 (39 aa)
MPSLSWILALTLSIVSELSTSSVIVFPVRVLTKICIFRA*

>peptide 3 (71 aa)
MERRLFLDVVIGEGPAVLELLSSEDEPLLVRRDAFLVLYLGLNIVDRVGALDLERDGLASQGLDEDLHATT*

>peptide 4 (61 aa)
MSLCWSGGMPSLSCILALTLSIVSELSTSSVMVLPVKVLTKICMPPRSLSTRWSVDSFWML*

Sequence

>CNT30128346
TTATTTTAAGGTTCATTCATTCACGGTTCACATAAAAGTACACCAGAACAAGCTTATAATACTGGAAAAATGGACACTTTCAAGCACCATGACATCAGAT
GAAATCATAAGACTGAAGACTCCTTAAAGAGAACACGCAAGTCTCTTCAGAAATCGCCACCACGCAGGCGCAAGACAAGGTGCAGGGTAGACTCCTTTTG
GATATTGTAATCGGCGAGGGTACGACCATCCTCCAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCCGGCGGAATCCCCTACTTGTCCTGAATCTTC
GCCTTCACATTGTCAATCGTGTCTGAGCTCTCCACCTCCAGCGTGATCGTCTTCCCTGTCAGGGTCTTCACGAAGATCTGCATACCTCCCCTCAACCGCA
GCACGAGATGGAGCGTCGACTCTTTCTGGATGTTGTAATCGGCGAGGGTCCTGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGCCTCTGCTGGTCCGG
AGGGATGCCTTCCTTGTCCTGTATCTTGGCCTTAACATTGTCGATCGTGTCGGAGCTCTCGACCTCGAGCGTGATGGTCTTGCCAGTCAAGGTCTTGACG
AAGATCTGCATGCCACCACGTAGCCTGAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTCCGGCCGTCCTCGAGCTGCTTCC
CGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAGCTCTCGACCTCGAGTGT
GATCGTCTTCCCGGTTAGGGTTTTGACAAAGATCTGCATCTTCAGGGCTTGATGATGACGAACTGAGAGAGAATTGGGGAAGAGAGAATCTGGGAGAAAG
ACGAACAGGGATTTTTTAGCGAAGAATGG