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Detailed information on CNT30128108


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697376Corymbia citriodoraOryza sativa30.412.1386.16159forward
CNT30676939Corymbia citriodoraSetaria viridis25.6256.388.81134forward
CNT30524487Corymbia citriodoraSetaria italica25.439.9788.72133forward
CNT30314796Corymbia citriodoraCorylus avellana32.8925.0484.88172forward
CNT30518741Corymbia citriodoraJuglans regia30.0231.6585.99157forward
CNT30702712Corymbia citriodoraQuercus lobata21.4113.3889.29112forward
CNT30273043Corymbia citriodoraChenopodium quinoa31.366.5784.76164forward
CNT30727836Corymbia citriodoraCorchorus capsularis18.3625.8187.596forward
CNT30381342Corymbia citriodoraManihot esculenta35.5623.0284.41186forward
CNT30405165Corymbia citriodoraBeta vulgaris27.3427.2986.01143forward
CNT30200362Corymbia citriodoraPisum sativum19.6936.9283.5103forward
CNT30710572Corymbia citriodoraGlycine max32.538.0382.35170forward
CNT30297329Corymbia citriodoraTriticum aestivum15.1133.9187.3479forward
CNT30390800Corymbia citriodoraTriticum turgidum18.1643.3887.3795forward
CNT30541563Corymbia citriodoraBrassica napus22.7517.8483.19119forward
CNT30145300Corymbia citriodoraMedicago truncatula17.5942.292.3992forward
CNT30663719Corymbia citriodoraTriticum dicoccoides18.1636.485.2695forward
CNT3075755Corymbia citriodoraBrassica juncea22.7517.4783.19119forward
CNT30263633Corymbia citriodoraBrassica rapa23.3320.482.79122forward
CNT30610790Corymbia citriodoraGossypium raimondii31.3653.5987.8164forward
CNT30207455Corymbia citriodoraHelianthus annuus20.6516.3483.33108forward
CNT30345068Corymbia citriodoraEragrostis tef32.3118.985.21169forward
CNT30365623Corymbia citriodoraSorghum bicolor25.8112.184.44135forward
CNT30620107Corymbia citriodoraCajanus cajan20.087.5588.57105forward
CNT30371242Corymbia citriodoraOryza glumipatula22.1817.7187.93116forward
CNT30570332Corymbia citriodoraVitis vinifera32.8928.8184.88172forward
CNT30104230Corymbia citriodoraOryza rufipogon30.46.4686.16159forward
CNT30117905Corymbia citriodoraOryza nivara30.413.7786.16159forward
CNT30725421Corymbia citriodoraLupinus angustifolius37.2826.6485.13195forward

Expression of CNT30128108

Peptides detected in this lncRNA

>peptide 1 (76 aa)
LGLALTSVLAKLSKRVGFGTDKQGILGCLYVLRARAYEKDTCHGFGDWFMAFKFRVASTSDCPPDKNCSYEEDCYH*

>peptide 2 (66 aa)
MRKIRAMGLAIGSWHSSSGWLQLRIVHQTRTAHTRKIAIIRTSEDRRRQPKHQMNQSKQKQVIVHK*

>peptide 3 (37 aa)
PRTRPHQCTCQAEQESWLWHGQARYPGLPLRSQGSGV*

Sequence

>CNT30128108
TCCTCGGACTCGCCCTCACCAGTGTACTTGCCAAGCTGAGCAAGAGAGTTGGCTTTGGCACGGACAAGCAAGGTATCCTGGGCTGCCTTTACGTTCTCAG
GGCTCGGGCGTATGAGAAAGATACGTGCCATGGGTTTGGCGATTGGTTCATGGCATTCAAGTTCAGGGTGGCTTCAACTTCGGATTGTCCACCAGACAAG
AACTGCTCATACGAGGAAGATTGCTATCATTAGAACAAGCGAAGACAGAAGAAGACAACCGAAACACCAAATGAACCAGAGCAAACAGAAGCAAGTCATA
GTTCACAAGTAAATGCAAGGGATTTGGTGGTGAGACTTGCCATGATTCCAGGGACTGCCGGGGGGATTCTGCGGTGGAGAAGCTTGAGGGTGTATTCAGA
GACTTGTTGAGGAGTGGCCCTGTCCTTGCACTCAGCACCGGGAGTGACCATGCTGGGCTTAAGTAGGATACCCTCGAACATGACATTGTTCTCAGCCAGA
TAGTAGAAAACCTCAGCCCAAAC