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Detailed information on CNT30127456


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 8e-103

BLAST vs NONCODE:
NONTPRT002153, E-value = 6e-78

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30529251Corymbia citriodoraEucalyptus grandis81.9973.3990.63651forward
CNT30315761Corymbia citriodoraCorylus avellana58.3136.2989.42463forward
CNT30699961Corymbia citriodoraQuercus lobata57.6843.2989.52458forward
CNT30727322Corymbia citriodoraCorchorus capsularis56.835.4889.58451forward
CNT30712762Corymbia citriodoraGlycine max56.9352.1390.27452forward
CNT30169912Corymbia citriodoraPistacia vera56.5528.2490.2449forward
CNT30189291Corymbia citriodoraSecale cereale57.4360.7290.57456forward
CNT30289038Corymbia citriodoraTriticum aestivum57.363.1990.33455forward
CNT30396078Corymbia citriodoraTriticum turgidum58.4424.590.73464forward
CNT30666718Corymbia citriodoraTriticum dicoccoides58.4469.6791.38464forward
CNT30686718Corymbia citriodoraTriticum urartu58.4421.2691.38464forward
CNT30722325Corymbia citriodoraTriticum spelta57.5659.5191.03457forward
CNT30120625Corymbia citriodoraCitrus clementina57.6841.9489.08458forward
CNT30150050Corymbia citriodoraBrachypodium distachyon56.6833.6390450forward

Expression of CNT30127456

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MVSELSTSRVMVLPVRVLTKICICRDQKNHKFKHRHQPSQPKN*

>peptide 2 (61 aa)
MRRCWSGGMPSLSWILALTLSMVSELSTSRVMVLPVRVLTKICIPPRRRRTRWRVDSFWML*

>peptide 3 (34 aa)
IQLKLKRFINKPHTIRNPSALISHNTHFGSEIHS*

Sequence

>CNT30127456
ATTCAATTGAAACTTAAAAGATTTATTAACAAGCCCCATACGATCAGGAACCCATCGGCCCTGATTTCACATAACACACACTTCGGTTCCGAAATTCATT
CATGACAACCGGACACCGGATTTGAGAGCAGACCCGACACACTTAGAATCCACCGCGGAGACGGAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTG
TAGTCCGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA
CATTATCGATGGTGTCGGAACTCTCAACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATACCTCCACGGAGACGCAGGACAAG
GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATC
CCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCT
GCATCTGCAGAGACCAAAAAAATCACAAATTTAAGCATCGGCATCAACCATCGCAACCCAAAAATTAAGAAAACGCCAAGAACACGAAAACCATAAAGAA
CACAAGATCCAAGATCTACACAGATCAGGAAAGAACACGAAACCCAATTCGCAGATCGCCAAGAACAGAGAGACCGGAGATCGGGAAGGCTAAC