Detailed information on CNT30127270


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30100822Corymbia citriodoraOryza rufipogon2.5721.3290.9155forward

Expression of CNT30127270

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MPRRCEHSCNFKSLVLTSLSDPNQYERCQLFHLCPIYTITAS*

>peptide 2 (47 aa)
MQVPTPFDINLEVDSLFRFINKPKRLLWKTIPWRVIMIPSQIMKLRG*

>peptide 3 (71 aa)
MPWRHQHICNAEALFYHHRVIQIKMKIVIFLSLSGMHGYCLLAILMIILFEFNMQNNRVVTSYSQHFTINR*

>peptide 4 (97 aa)
MKNGTFTSIFRHQLFIIKLPPVKRCHMVVSSCQNKVKIVLENKIYEFFQNIESVTVCFSFSGKFLCNFLSDQGSICVILQTLCWYTMVLLIYSYELG*

>peptide 5 (51 aa)
MNSFKTLRASRFAFPFLANFFVTFCPTRDLYVLFYRLFAGIQWFCSFILMN*

>peptide 6 (55 aa)
MSAVANVSLCNLRLRCLADRLVFGQELELLLQLDIQVAGAMITTILDVDCSSESN*

>peptide 7 (39 aa)
MKDVSSFISVPYTPLLLPSYSDDNIVVSCHCRKENCYII*

>peptide 8 (32 aa)
MQSKTMLSHWLIGFCPGARIVASVRDSSCQGKA

>peptide 9 (31 aa)
MHQLASANKIHKGSDFFCDVSCMYPEAPGSE*

Sequence

>CNT30127270
AAGAGATCGAAGATACCTCCACAGTTGTTACAGAGAGAAGAATGGTTGTTTCTAGTAGCCATATAAAGGGTAGAAATTGTTCTTGAAGTTAAAGCTTCTG
ATCTCTATGAAAACATTGCTAGTGTTGCAGATTGCCTTCTTTTTTTCTGGTGAATTTTTTCTAGCTTTCTGTTGGGCCAGCTGATCAATATGTGTGATTT
TGCATTCTTGGCTGGTATACTATGGTTTTGCTCATATATCCATATGAACTGGGATAAATAGATGCCTAGAAGATGCGAGCACAGCTGCAATTTCAAAAGC
CTTGTTCTAACGTCATTGAGTGATCCAAATCAATATGAAAGATGTCAGCTCTTTCATCTCTGTCCCATATACACCATTACTGCTTCCTAGCTATTCTGAC
GATAATATAGTCGTATCTTGTCATTGTAGAAAAGAGAATTGTTACATCATATAGTCTTCATTTGAACTCTGAGAGGTGACAATTAGATGTCTGCTGTGGC
AAATGTGTCACTTTGCAATTTAAGACTACGCTGTCTCGCTGACCGATTGGTTTTTGGTCAGGAGCTTGAATTGTTGCTTCAGTTGGACATTCAAGTTGCT
GGGGCCATGATAACAACAATCTTGGATGTCGACTGTAGCAGTGAGTCCAATTGACTTGCGTAAGAATGTGATCTGAAAAATCAAACAGAAGGGTAGGTTC
TCCCGACTCCCGAATTCTTTTCATCTCAAACTGCCATTTTTTTTCGTCTCGTTCAGCAATAGCGGGGTCTTCAGTTGCAGGGTTTGGTTGCCCAAATTAG
ACTTGATTTTGCCAAAAGTCGTCATCTCTATAAGCCTGGCTGGCAAGGCATCCTTCTGACAGCAGGGTTCTCAACCTTGCCTCGCTCTTATGACATGCCA
TCTGCCCCCTCTGCAGTCCCTAGTCAAGGGTGAGTCCCATGCGTCAGGTTGTTGATTGCGGTCTCACATACTAATCCCTGCAGACTCCTGTAGGAGGCCC
AAATAATATCGAATTTAATTTTCATGCAGGTTCCTACACCATTTGATATTAATTTGGAAGTTGATTCTCTTTTCAGGTTTATCAACAAGCCAAAACGCTT
ATTGTGGAAAACGATTCCCTGGAGAGTTATTATGATACCAAGTCAAATAATGAAACTCAGAGGGTGATCTACAGTATAACTCAAGACTGCAGGACTGTGA
AATGCTTCTTCTAATTCGATAACAGATATTTCAAAATGATACCGTTAACTAGAGGGCAAATGTTACTGAAGAGACCGAAAATACTTTGACAATTATTAGA
GAATAATGGGGAGTTGTTTCGTTGTTTGTTTCCAGGTTACTTAAGATCCCACTAGACCAAAACATTTGGAAGTTTATTCTCTACTGGAGAGGAAAAGAGG
GACGTTCATGAAAAACGGCACTTTTACTAGCATTTTCAGACACCAACTCTTTATTATCAAATTGCCACCGGTCAAACGTTGTCATATGGTTGTTTCCAGT
TGCCAAAATAAAGTCAAAATTGTTCTTGAGAATAAAATTTATGAATTCTTTCAAAACATTGAGAGCGTCACGGTTTGCTTTTCCTTTTCTGGCAAATTTC
TTTGTAACTTTCTGTCCGACCAGGGATCTATATGTGTTATTTTACAGACTCTTTGCTGGTATACAATGGTTTTGCTCATTTATTCTTATGAACTAGGATA
AATAGATGCCTTGGAGACACCAGCACATCTGCAATGCAGAAGCTTTGTTCTATCATCATAGAGTTATCCAAATCAAAATGAAAATTGTCATTTTTCTATC
TCTGTCCGGTATGCATGGGTACTGCTTACTAGCTATTTTGATGATTATTTTGTTTGAATTTAACATGCAGAATAACAGAGTGGTTACATCATATAGTCAG
CACTTTACCATTAATAGGTGACAACTAGATCTTTGTTGCTGCAAATGCATCAACTTGCTTCAGCAAATAAGATACATAAAGGCAGCGACTTCTTTTGTGA
TGTATCCTGTATGTATCCGGAAGCTCCTGGATCTGAGTAATGCAATCTAAGACTATGTTGTCTCACTGGCTGATTGGTTTTTGTCCAGGAGCTAGAATTG
TTGCTTCCGTCAGGGATTCAAGTTGCCAGGGTAAGGCA